SMTL ID : 8fyh.1

G4 RNA-mediated PRC2 dimer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-mer

Ligands

14 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain D: C.528, H.530, C.535, C.539, C.548 Ligands: ZN.2, ZN.3 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.528, D:H.530, D:C.535, D:C.539 ZN.2: 7 residues within 4Å: Chain D: C.528, C.539, C.541, C.548, C.552 Ligands: ZN.1, ZN.3 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.528, D:C.541, D:C.548, D:C.552 ZN.3: 7 residues within 4Å: Chain D: C.528, C.535, C.548, C.554, C.558 Ligands: ZN.1, ZN.2 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.535, D:C.548, D:C.554, D:C.558 ZN.4: 6 residues within 4Å: Chain D: C.565, C.567, C.571, C.576 Ligands: ZN.5, ZN.6 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.565, D:C.567, D:C.571, D:C.576 ZN.5: 6 residues within 4Å: Chain D: C.571, C.585, C.593, C.606 Ligands: ZN.4, ZN.6 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.571, D:C.585, D:C.593, D:C.606 ZN.6: 6 residues within 4Å: Chain D: C.565, C.578, C.585, C.590 Ligands: ZN.4, ZN.5 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.565, D:C.578, D:C.585, D:C.590 ZN.7: 4 residues within 4Å: Chain D: C.286, C.289, C.294, H.297 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.286, D:C.289, D:C.294, D:H.297 ZN.8: 7 residues within 4Å: Chain J: C.528, H.530, C.535, C.539, C.548 Ligands: ZN.9, ZN.10 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.528, J:H.530, J:C.535, J:C.539 ZN.9: 7 residues within 4Å: Chain J: C.528, C.539, C.541, C.548, C.552 Ligands: ZN.8, ZN.10 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.528, J:C.541, J:C.548, J:C.552 ZN.10: 7 residues within 4Å: Chain J: C.528, C.535, C.548, C.554, C.558 Ligands: ZN.8, ZN.9 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.535, J:C.548, J:C.554, J:C.558 ZN.11: 6 residues within 4Å: Chain J: C.565, C.567, C.571, C.576 Ligands: ZN.12, ZN.13 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.565, J:C.567, J:C.571, J:C.576 ZN.12: 6 residues within 4Å: Chain J: C.571, C.585, C.593, C.606 Ligands: ZN.11, ZN.13 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.571, J:C.585, J:C.593, J:C.606 ZN.13: 6 residues within 4Å: Chain J: C.565, C.578, C.585, C.590 Ligands: ZN.11, ZN.12 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.565, J:C.578, J:C.585, J:C.590 ZN.14: 4 residues within 4Å: Chain J: C.286, C.289, C.294, H.297 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.286, J:C.289, J:C.294, J:H.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, J. et al., Structural basis for inactivation of PRC2 by G-quadruplex RNA. Science (2023)

Release Date

2023-10-04

Peptides

Polycomb protein SUZ12: AG
Polycomb protein EED: BH
Histone-binding protein RBBP4: CI
Histone-lysine N-methyltransferase EZH2: DJ
protein Jumonji isoform X3: EK
Zinc finger protein AEBP2: FL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

G
H

B
C

H
I

C
D

I
J

D
A

J
G

E
E

K
K

F
F

L
L

Polycomb protein SUZ12

Polycomb protein EED

Histone-binding protein RBBP4

Histone-lysine N-methyltransferase EZH2

protein Jumonji isoform X3

Zinc finger protein AEBP2

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