SMTL ID : 8g1u.1

Structure of the methylosome-Lsm10/11 complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-4-mer

Ligands

4 x ADN: ADENOSINE(Non-covalent)

ADN.1: 18 residues within 4Å: Chain A: P.314, L.315, L.319, Y.324, G.365, G.367, V.391, E.392, K.393, S.418, D.419, M.420, R.421, E.435, L.436, E.444, C.449 Chain M: R.74 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:P.314, A:G.367, A:E.392, A:K.393, A:D.419, A:M.420 pi-Cation interactions: A:K.393 ADN.2: 18 residues within 4Å: Chain D: P.314, L.315, L.319, Y.324, G.365, G.367, V.391, E.392, K.393, N.394, S.418, D.419, M.420, R.421, E.435, L.436, C.449 Chain N: R.74 9 PLIP interactions: 7 interactions with chain D, 2 interactions with chain N Hydrogen bonds: D:G.367, D:E.392, D:K.393, D:D.419, D:M.420, D:E.435, N:R.74, N:R.74 pi-Cation interactions: D:K.393 ADN.3: 19 residues within 4Å: Chain G: P.314, L.315, L.319, Y.324, G.365, G.367, V.391, E.392, K.393, N.394, S.418, D.419, M.420, R.421, E.435, L.436, E.444, C.449 Chain O: R.74 8 PLIP interactions: 8 interactions with chain G Hydrogen bonds: G:P.314, G:Y.324, G:G.367, G:E.392, G:K.393, G:D.419, G:M.420 pi-Cation interactions: G:K.393 ADN.4: 17 residues within 4Å: Chain J: P.314, L.315, L.319, Y.324, G.365, G.367, V.391, E.392, K.393, S.418, D.419, M.420, R.421, E.435, L.436, C.449 Chain P: R.74 9 PLIP interactions: 8 interactions with chain J, 1 interactions with chain P Hydrogen bonds: J:Y.324, J:G.367, J:E.392, J:E.392, J:K.393, J:D.419, J:M.420, P:R.74 pi-Cation interactions: J:K.393

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, X.C. et al., In vitro methylation of the U7 snRNP subunits Lsm11 and SmE by the PRMT5/MEP50/pICln methylosome. Rna (2023)

Release Date

2023-08-23

Peptides

Protein arginine N-methyltransferase 5: ADGJ
Methylosome protein 50: BEHK
Methylosome subunit pICln: CFIL
U7 snRNA-associated Sm-like protein LSm11: MNOP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
E

G
I

J
M

B
B

E
F

H
J

K
N

C
C

F
G

I
K

L
O

M
D

N
H

O
L

P
P

Protein arginine N-methyltransferase 5

Methylosome protein 50

Methylosome subunit pICln

U7 snRNA-associated Sm-like protein LSm11

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