- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-3-1-1-2-mer
- Ligands
- 3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain B: T.52, R.215
- Ligands: ADP.1, ALF.3
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:T.52
MG.6: 4 residues within 4Å:- Chain C: T.52, D.126
- Ligands: ADP.5, ALF.7
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:T.52
MG.10: 4 residues within 4Å:- Chain D: T.52, R.215
- Ligands: ADP.9, ALF.11
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:T.52
- 3 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)
ALF.3: 12 residues within 4Å:- Chain B: R.47, G.48, K.51, T.52, E.127, T.157, R.215
- Chain C: E.144, T.165, R.169
- Ligands: ADP.1, MG.2
No protein-ligand interaction detected (PLIP)ALF.7: 9 residues within 4Å:- Chain C: R.47, G.48, K.51, T.52, T.157, R.215
- Chain D: R.169
- Ligands: ADP.5, MG.6
No protein-ligand interaction detected (PLIP)ALF.11: 10 residues within 4Å:- Chain D: R.47, G.48, K.51, T.52, T.157, R.215
- Chain E: T.154, R.158
- Ligands: ADP.9, MG.10
No protein-ligand interaction detected (PLIP)- 4 x ZN: ZINC ION(Non-covalent)
ZN.4: 7 residues within 4Å:- Chain B: C.64, E.65, C.73, G.74, V.75, C.76, C.79
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.64, B:C.73, B:C.76, B:C.79
ZN.8: 7 residues within 4Å:- Chain C: C.64, E.65, C.73, G.74, V.75, C.76, C.79
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:C.64, C:C.73, C:C.76, C:C.79
ZN.12: 7 residues within 4Å:- Chain D: C.64, E.65, C.73, G.74, V.75, C.76, C.79
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.64, D:C.73, D:C.76, D:C.79
ZN.13: 8 residues within 4Å:- Chain E: C.50, Q.51, S.58, C.59, G.60, H.61, C.62, C.65
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:C.50, E:C.59, E:C.62, E:C.65
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xu, Z.Q. et al., Structural characterisation of the complete cycle of sliding clamp loading in Escherichia coli. Nat Commun (2024)
- Release Date
- 2024-03-27
- Peptides
- DNA polymerase III subunit delta: A
DNA polymerase III subunit tau: BCD
DNA polymerase III subunit delta': E
DNA polymerase III subunit psi: F
Beta sliding clamp: GH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
HH
I
SMTL ID : 8gj1.1
E. coli clamp loader with open clamp on primed template DNA (form 2)
DNA polymerase III subunit delta
DNA polymerase III subunit tau
DNA polymerase III subunit delta'
DNA polymerase III subunit psi
Beta sliding clamp
Toggle Identical (GH)Related Entries With Identical Sequence
1a5t.1 | 1jqj.1 | 1jqj.2 | 1jqj.3 | 1jqj.4 | 1jqj.5 | 1jr3.1 | 1mmi.1 | 1ok7.1 | 1unn.1 | 1xxh.1 | 1xxh.2 | 1xxi.1 | 1xxi.2 | 2pol.1 | 3bep.1 | 3d1e.1 | 3d1f.1 | 3d1g.1 | 3glf.1 | 3glf.2 | 3glg.1 | 3glg.2 | 3glh.1 | 3glh.2 | 3glh.3 | 3gli.1 | 3gli.2 | 3q4j.1 | 3q4j.2 more...less...3q4j.3 | 3q4k.1 | 3qsb.1 | 4k3k.1 | 4k3l.1 | 4k3m.1 | 4k3o.1 | 4k3p.1 | 4k3q.1 | 4k3r.1 | 4k3s.1 | 4mjp.1 | 4mjq.1 | 4mjr.1 | 4n94.1 | 4n95.1 | 4n96.1 | 4n97.1 | 4n98.1 | 4n99.1 | 4n9a.1 | 4ovf.1 | 4ovg.1 | 4ovh.1 | 4pnu.1 | 4pnv.1 | 4pnw.1 | 5fku.1 | 5fkv.1 | 5fkw.1 | 5m1s.1 | 8giy.1 | 8giz.1 | 8gj0.1 | 8gj2.1 | 8gj3.1 | 8val.1 | 8van.1 | 8vaq.1 | 8var.1 | 8vas.1 | 8vat.1