SMTL ID : 8hko.1 (1 other biounit)

Mutated human ADP-ribosyltransferase 2 (PARP2) catalytic domain bound to Rucaparib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: D.168, A.243, N.244, C.246, F.247, A.248, F.349, F.351 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.168, A:C.246, A:F.247, A:A.248 GOL.2: 9 residues within 4Å: Chain A: E.107, H.200, Y.227, G.232, I.233, Y.234 Ligands: GOL.3, GOL.5, RPB.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.234 Water bridges: A:A.218, A:G.232 GOL.3: 9 residues within 4Å: Chain A: Q.104, E.107, S.202, R.203, Y.245, F.247 Ligands: GOL.2, GOL.5, RPB.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.104, A:E.107, A:R.203, A:Y.245 GOL.4: 5 residues within 4Å: Chain A: L.16, M.204, K.252, N.253, T.254 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.252, A:T.254 Water bridges: A:N.253 GOL.5: 10 residues within 4Å: Chain A: E.107, D.111, H.200, G.201, S.202, N.206, I.210, L.215 Ligands: GOL.2, GOL.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.107, A:H.200 Water bridges: A:N.206, A:R.216, A:R.216, A:R.216

1 x RPB: Rucaparib(Non-covalent)

RPB.6: 14 residues within 4Å: Chain A: S.100, I.103, H.200, G.201, G.226, Y.234, F.235, A.236, K.241, S.242, Y.245, E.330 Ligands: GOL.2, GOL.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.245, A:Y.245, A:Y.245, A:E.330 Hydrogen bonds: A:S.100, A:G.201, A:G.201 Water bridges: A:I.103, A:Y.245, A:E.330, A:E.330 pi-Stacking: A:Y.234, A:Y.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X.Y. et al., Mutated human ADP-ribosyltransferase 2 (PARP2) catalytic domain bound to Rucaparib. To Be Published

Release Date

2024-05-01

Peptides

Poly [ADP-ribose] polymerase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Poly [ADP-ribose] polymerase 2

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