SMTL ID : 8hlq.2 (1 other biounit)

Mutated human ADP-ribosyltransferase 2 (PARP2) catalytic domain bound to Niraparib (MK-4827)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: E.107, H.200, Y.227, G.232, I.233, Y.234 Ligands: 3JD.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.234 Water bridges: A:G.232 GOL.2: 9 residues within 4Å: Chain A: D.168, Y.169, A.243, N.244, C.246, F.247, A.248, F.349, F.351 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.168, A:D.168, A:A.243, A:N.244, A:N.244, A:C.246, A:F.247, A:A.248

1 x 3JD: 2-{4-[(3S)-piperidin-3-yl]phenyl}-2H-indazole-7-carboxamide(Non-covalent)

3JD.3: 16 residues within 4Å: Chain A: S.100, I.103, Q.104, E.107, H.200, G.201, G.226, Y.227, Y.234, F.235, A.236, K.241, S.242, Y.245, E.330 Ligands: GOL.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.103, A:Y.227, A:Y.234, A:Y.234, A:A.236, A:Y.245, A:Y.245, A:E.330 Hydrogen bonds: A:S.100, A:G.201, A:G.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X.Y. et al., Mutated human ADP-ribosyltransferase 2 (PARP2) catalytic domain bound to Niraparib (MK-4827). To Be Published

Release Date

2024-05-01

Peptides

Poly [ADP-ribose] polymerase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Poly [ADP-ribose] polymerase 2

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