SMTL ID : 8hks.2 (3 other biounits)

Mutated human ADP-ribosyltransferase 2 (PARP2) catalytic domain bound to Pamiparib(BGB-290)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: E.107, H.200, R.216, Y.227, G.232, I.233, Y.234 Ligands: GOL.2, DS9.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.107, A:H.200, A:R.216, A:Y.234 GOL.2: 8 residues within 4Å: Chain A: E.107, D.111, H.200, S.202, I.210, L.215, R.216 Ligands: GOL.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.107, A:H.200, A:R.216, A:R.216 GOL.3: 5 residues within 4Å: Chain A: S.160, H.162, P.164, M.238, A.313 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.160, A:A.313 GOL.4: 6 residues within 4Å: Chain A: H.166, K.241, Y.324, L.326, N.327, Y.328 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.324, A:N.327, A:N.327, A:Y.328, A:Y.328 Water bridges: A:N.244 GOL.5: 7 residues within 4Å: Chain A: Y.169, A.243, N.244, F.247, A.248, F.349, F.351 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.243, A:A.248

1 x DS9: (2R)-14-fluoro-2-methyl-6,9,10,19-tetrazapentacyclo[14.2.1.02,6.08,18.012,17]nonadeca-1(18),8,12(17),13,15-pentaen-11-one(Non-covalent)

DS9.6: 12 residues within 4Å: Chain A: S.100, Q.104, H.200, G.201, Y.234, F.235, A.236, K.241, S.242, Y.245, E.330 Ligands: GOL.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.234, A:Y.245, A:Y.245, A:E.330 Hydrogen bonds: A:G.201, A:G.201 Salt bridges: A:E.107 pi-Stacking: A:Y.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X.Y. et al., Mutated human ADP-ribosyltransferase 2 (PARP2) catalytic domain bound to Pamiparib. To Be Published

Release Date

2024-05-01

Peptides

Poly [ADP-ribose] polymerase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Poly [ADP-ribose] polymerase 2

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