SMTL ID : 8hks.4 (3 other biounits)

Mutated human ADP-ribosyltransferase 2 (PARP2) catalytic domain bound to Pamiparib(BGB-290)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: Y.169, A.243, N.244, C.246, F.247, A.248, F.349 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.248 GOL.2: 8 residues within 4Å: Chain A: E.107, R.216, A.218, Y.227, G.232, I.233 Ligands: GOL.3, DS9.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.107, A:A.218 GOL.3: 7 residues within 4Å: Chain A: E.107, D.111, H.200, S.202, I.210, R.216 Ligands: GOL.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.111, A:G.201, A:S.202, A:R.216

1 x DS9: (2R)-14-fluoro-2-methyl-6,9,10,19-tetrazapentacyclo[14.2.1.02,6.08,18.012,17]nonadeca-1(18),8,12(17),13,15-pentaen-11-one(Non-covalent)

DS9.4: 11 residues within 4Å: Chain A: Q.104, H.200, G.201, Y.234, F.235, A.236, K.241, S.242, Y.245, E.330 Ligands: GOL.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.234, A:Y.245, A:Y.245, A:E.330 Hydrogen bonds: A:G.201, A:G.201 Water bridges: A:E.330, A:E.330 Salt bridges: A:E.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X.Y. et al., Mutated human ADP-ribosyltransferase 2 (PARP2) catalytic domain bound to Pamiparib. To Be Published

Release Date

2024-05-01

Peptides

Poly [ADP-ribose] polymerase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Poly [ADP-ribose] polymerase 2

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