SMTL ID : 8i8e.1

Acyl-ACP synthetase structure bound to C18:1-ACP

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-mer

Ligands

6 x PNS: 4'-PHOSPHOPANTETHEINE(Covalent)

PNS.1: 9 residues within 4Å: Chain A: S.37 Chain D: R.96, P.223, H.226, V.269, T.271, I.272, L.275 Ligands: OLA.7 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: D:I.272 Hydrogen bonds: D:R.96, D:R.96, D:T.271, A:S.37 PNS.14: 8 residues within 4Å: Chain C: R.96, P.223, H.226, V.269, T.271, I.272 Chain H: S.37 Ligands: OLA.5 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain H Hydrogen bonds: C:R.96, C:R.96, C:T.271, H:S.37, H:S.37 PNS.15: 7 residues within 4Å: Chain E: R.96, P.223, H.226, I.272, L.275 Chain I: S.37 Ligands: OLA.9 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain I Hydrophobic interactions: E:I.272 Hydrogen bonds: E:R.96, E:R.96, I:S.37 PNS.16: 8 residues within 4Å: Chain F: R.96, P.223, H.226, Y.249, I.272, L.275 Chain J: S.37 Ligands: OLA.11 5 PLIP interactions: 3 interactions with chain F, 2 interactions with chain J Hydrophobic interactions: F:I.272 Hydrogen bonds: F:R.96, F:R.96, J:S.37, J:S.37 PNS.17: 8 residues within 4Å: Chain B: R.96, P.223, H.226, Y.249, I.272, L.275 Chain K: S.37 Ligands: OLA.3 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain K Hydrophobic interactions: B:I.272 Hydrogen bonds: B:R.96, B:R.96, K:S.37 PNS.18: 7 residues within 4Å: Chain G: R.96, P.223, H.226, I.272, L.275 Chain L: S.37 Ligands: OLA.13 5 PLIP interactions: 3 interactions with chain G, 2 interactions with chain L Hydrophobic interactions: G:I.272 Hydrogen bonds: G:R.96, G:R.96, L:S.37, L:S.37

6 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 14 residues within 4Å: Chain B: T.175, G.295, G.296, A.297, A.298, G.317, Y.318, G.319, M.320, S.321, E.322, D.411, R.426 Ligands: OLA.3 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:T.175, B:A.298, B:G.317, B:G.319, B:S.321, B:S.321, B:S.321, B:D.411, B:R.426 pi-Stacking: B:Y.318 AMP.4: 14 residues within 4Å: Chain C: T.175, G.295, G.296, A.297, A.298, G.317, Y.318, G.319, M.320, S.321, E.322, D.411, R.426 Ligands: OLA.5 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:T.175, C:A.298, C:G.317, C:G.319, C:S.321, C:S.321, C:S.321, C:D.411, C:R.426 pi-Stacking: C:Y.318 AMP.6: 14 residues within 4Å: Chain D: T.175, G.295, G.296, A.297, A.298, G.317, Y.318, G.319, M.320, S.321, E.322, D.411, R.426 Ligands: OLA.7 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:T.175, D:A.298, D:G.317, D:G.319, D:S.321, D:S.321, D:S.321, D:D.411, D:R.426 pi-Stacking: D:Y.318 AMP.8: 14 residues within 4Å: Chain E: T.175, G.295, G.296, A.297, A.298, G.317, Y.318, G.319, M.320, S.321, E.322, D.411, R.426 Ligands: OLA.9 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:T.175, E:A.298, E:G.317, E:G.319, E:S.321, E:S.321, E:S.321, E:D.411, E:R.426 pi-Stacking: E:Y.318 AMP.10: 14 residues within 4Å: Chain F: T.175, G.295, G.296, A.297, A.298, G.317, Y.318, G.319, M.320, S.321, E.322, D.411, R.426 Ligands: OLA.11 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:T.175, F:A.298, F:G.317, F:G.319, F:S.321, F:S.321, F:S.321, F:D.411, F:R.426 pi-Stacking: F:Y.318 AMP.12: 14 residues within 4Å: Chain G: T.175, G.295, G.296, A.297, A.298, G.317, Y.318, G.319, M.320, S.321, E.322, D.411, R.426 Ligands: OLA.13 10 PLIP interactions: 10 interactions with chain G Hydrogen bonds: G:T.175, G:A.298, G:G.317, G:G.319, G:S.321, G:S.321, G:S.321, G:D.411, G:R.426 pi-Stacking: G:Y.318

6 x OLA: OLEIC ACID(Non-covalent)

OLA.3: 18 residues within 4Å: Chain B: I.203, T.222, P.223, H.226, W.230, L.232, F.265, V.293, G.295, F.315, G.317, Y.318, G.319, P.325, I.326, I.329 Ligands: AMP.2, PNS.17 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:I.203, B:H.226, B:W.230, B:W.230, B:W.230, B:L.232, B:F.265, B:F.315, B:P.325, B:I.329 OLA.5: 18 residues within 4Å: Chain C: I.203, T.222, P.223, H.226, W.230, L.232, F.265, V.293, G.295, F.315, G.317, Y.318, G.319, P.325, I.326, I.329 Ligands: AMP.4, PNS.14 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:I.203, C:H.226, C:W.230, C:W.230, C:W.230, C:L.232, C:F.265, C:F.315, C:P.325, C:I.329 OLA.7: 18 residues within 4Å: Chain D: I.203, T.222, P.223, H.226, W.230, L.232, F.265, V.293, G.295, F.315, G.317, Y.318, G.319, P.325, I.326, I.329 Ligands: PNS.1, AMP.6 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:I.203, D:H.226, D:W.230, D:W.230, D:W.230, D:L.232, D:F.265, D:F.315, D:P.325, D:I.329 OLA.9: 18 residues within 4Å: Chain E: I.203, T.222, P.223, H.226, W.230, L.232, F.265, V.293, G.295, F.315, G.317, Y.318, G.319, P.325, I.326, I.329 Ligands: AMP.8, PNS.15 10 PLIP interactions: 10 interactions with chain E Hydrophobic interactions: E:I.203, E:H.226, E:W.230, E:W.230, E:W.230, E:L.232, E:F.265, E:F.315, E:P.325, E:I.329 OLA.11: 18 residues within 4Å: Chain F: I.203, T.222, P.223, H.226, W.230, L.232, F.265, V.293, G.295, F.315, G.317, Y.318, G.319, P.325, I.326, I.329 Ligands: AMP.10, PNS.16 10 PLIP interactions: 10 interactions with chain F Hydrophobic interactions: F:I.203, F:H.226, F:W.230, F:W.230, F:W.230, F:L.232, F:F.265, F:F.315, F:P.325, F:I.329 OLA.13: 18 residues within 4Å: Chain G: I.203, T.222, P.223, H.226, W.230, L.232, F.265, V.293, G.295, F.315, G.317, Y.318, G.319, P.325, I.326, I.329 Ligands: AMP.12, PNS.18 10 PLIP interactions: 10 interactions with chain G Hydrophobic interactions: G:I.203, G:H.226, G:W.230, G:W.230, G:W.230, G:L.232, G:F.265, G:F.315, G:P.325, G:I.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, H. et al., Acyl-ACP synthetase structure bound to C18:1-ACP. To Be Published

Release Date

2024-02-07

Peptides

Acyl carrier protein: AHIJKL
Acyl-acyl carrier protein synthetase: BCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
f

H
a

I
b

J
c

K
d

L
e

B
D

C
A

D
F

E
B

F
C

G
E

Acyl carrier protein

Acyl-acyl carrier protein synthetase

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