SMTL ID : 8j99.1

Human 3-methylcrotonyl-CoA carboxylase in BCS-mcoa state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-mer

Ligands

6 x TW3: ~{S}-[2-[3-[[(2~{R})-4-[[[(2~{S},3~{S},4~{S},5~{S})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 3-methylbut-2-enethioate

TW3.1: 19 residues within 4Å: Chain B: R.78, K.141, G.142, A.144, G.174, G.175, A.176, Y.177, L.178, F.191, T.217, A.218, G.219 Chain L: G.446, A.447, V.472, I.485, Q.489, R.492 13 PLIP interactions: 9 interactions with chain B, 4 interactions with chain L Hydrophobic interactions: B:F.191, B:T.217, L:V.472 Hydrogen bonds: B:K.141, B:G.174, B:A.176, B:A.176, B:L.178, L:Q.489 Salt bridges: B:R.78, B:K.141, L:R.492, L:R.492 TW3.2: 20 residues within 4Å: Chain D: R.78, K.141, G.142, A.144, G.174, G.175, A.176, Y.177, L.178, F.191, T.217, A.218, G.219 Chain J: G.446, A.447, V.472, V.481, I.485, Q.489, R.492 13 PLIP interactions: 4 interactions with chain J, 9 interactions with chain D Hydrophobic interactions: J:V.472, D:F.191, D:T.217 Hydrogen bonds: J:Q.489, D:K.141, D:G.174, D:A.176, D:A.176, D:L.178 Salt bridges: J:R.492, J:R.492, D:R.78, D:K.141 TW3.3: 19 residues within 4Å: Chain G: R.78, K.141, G.142, A.144, G.174, G.175, A.176, Y.177, L.178, F.191, T.217, A.218, G.219 Chain H: A.447, V.472, L.482, I.485, Q.489, R.492 13 PLIP interactions: 9 interactions with chain G, 4 interactions with chain H Hydrophobic interactions: G:F.191, G:T.217, H:V.472 Hydrogen bonds: G:K.141, G:G.174, G:A.176, G:A.176, G:L.178, H:Q.489 Salt bridges: G:R.78, G:K.141, H:R.492, H:R.492 TW3.4: 20 residues within 4Å: Chain G: G.446, A.447, V.472, V.481, I.485, Q.489, R.492 Chain H: R.78, K.141, G.142, A.144, G.174, G.175, A.176, Y.177, L.178, F.191, T.217, A.218, G.219 13 PLIP interactions: 4 interactions with chain G, 9 interactions with chain H Hydrophobic interactions: G:V.472, H:F.191, H:T.217 Hydrogen bonds: G:Q.489, H:K.141, H:G.174, H:A.176, H:A.176, H:L.178 Salt bridges: G:R.492, G:R.492, H:R.78, H:K.141 TW3.5: 20 residues within 4Å: Chain D: G.446, A.447, V.472, V.481, I.485, Q.489, R.492 Chain J: R.78, K.141, G.142, A.144, G.174, G.175, A.176, Y.177, L.178, F.191, T.217, A.218, G.219 13 PLIP interactions: 9 interactions with chain J, 4 interactions with chain D Hydrophobic interactions: J:F.191, J:T.217, D:V.472 Hydrogen bonds: J:K.141, J:G.174, J:A.176, J:A.176, J:L.178, D:Q.489 Salt bridges: J:R.78, J:K.141, D:R.492, D:R.492 TW3.6: 16 residues within 4Å: Chain B: A.447, V.472, I.485, Q.489, R.492 Chain L: R.78, K.141, G.142, A.144, G.174, G.175, A.176, Y.177, L.178, F.191, T.217 12 PLIP interactions: 3 interactions with chain B, 9 interactions with chain L Hydrogen bonds: B:Q.489, L:K.141, L:G.174, L:A.176, L:A.176, L:L.178 Salt bridges: B:R.492, B:R.492, L:R.78, L:K.141 Hydrophobic interactions: L:F.191, L:T.217

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, D.S. et al., Human 3-methylcrotonyl-CoA carboxylase in BCS-mcoa state. To Be Published

Release Date

2024-05-08

Peptides

Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial: ACEFIK
Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial: BDGHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

F
F

I
I

K
K

B
B

D
D

G
G

H
H

J
J

L
L

Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial

Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial

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