SMTL ID : 8jhw.1

The first crystal structure of a H-2Kb-restricted decapeptide from Cryptosporidium parvum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.12 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: E.166, W.167, R.170 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.166, A:E.166, A:R.170 EDO.2: 4 residues within 4Å: Chain A: Y.59, R.62, E.63, W.167 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.62, A:E.63, A:E.63 Water bridges: A:K.66 EDO.3: 2 residues within 4Å: Chain A: Q.87, C.121 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.118 EDO.4: 4 residues within 4Å: Chain A: Y.27, D.30 Chain B: F.57, Y.64 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Y.64, A:D.30, A:D.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, S. et al., The first crystal structure of a H-2Kb-restricted decapeptide from Cryptosporidium parvum. To Be Published

Release Date

2024-05-29

Peptides

H-2 class I histocompatibility antigen, K-B alpha chain: A
Beta-2-microglobulin: B
VAL-THR-PHE-GLU-LYS-SER-TYR-ASN-THR-VAL: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

H-2 class I histocompatibility antigen, K-B alpha chain

Beta-2-microglobulin

VAL-THR-PHE-GLU-LYS-SER-TYR-ASN-THR-VAL

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