SMTL ID : 8jsy.5 (4 other biounits)

Dihydrofolate reductase-like enzyme from Leptospira interrogans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

5 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 10 residues within 4Å: Chain A: P.19, E.24, I.66, F.67, Y.70, W.78, W.124 Chain B: V.195 Ligands: 1PE.2, NAP.3 No protein-ligand interaction detected (PLIP) 1PE.2: 9 residues within 4Å: Chain A: F.9, Y.39, E.40, S.44, M.48, K.145, F.147 Chain B: V.195 Ligands: 1PE.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.44, A:S.44, A:K.145 1PE.9: 7 residues within 4Å: Chain B: Y.87, F.103, L.104, D.109, K.112, L.113, S.116 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.116 1PE.10: 9 residues within 4Å: Chain B: E.24, M.52, F.67, Y.70, W.71, W.78, W.124 Ligands: 1PE.11, NAP.12 No protein-ligand interaction detected (PLIP) 1PE.11: 6 residues within 4Å: Chain B: Y.39, S.44, M.48, F.147, I.181 Ligands: 1PE.10 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.44

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.3: 24 residues within 4Å: Chain A: S.8, F.9, M.16, Q.17, A.18, P.19, E.24, D.25, G.60, R.61, K.62, T.63, M.89, S.90, K.91, T.92, G.125, S.126, G.127, E.128, L.129, L.132, K.155 Ligands: 1PE.1 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:P.19 Hydrogen bonds: A:F.9, A:M.16, A:A.18, A:E.24, A:D.25, A:D.25, A:G.60, A:R.61, A:R.61, A:K.62, A:T.63, A:T.63, A:S.90, A:K.91, A:T.92, A:S.126, A:G.127, A:E.128, A:L.129 Water bridges: A:G.125, A:K.155, A:K.155 Salt bridges: A:R.61, A:K.62, A:K.155 NAP.12: 24 residues within 4Å: Chain B: S.8, F.9, M.16, Q.17, A.18, P.19, E.24, D.25, G.60, R.61, K.62, T.63, M.89, S.90, K.91, T.92, G.125, S.126, G.127, E.128, L.129, L.132, K.155 Ligands: 1PE.10 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:P.19 Hydrogen bonds: B:F.9, B:M.16, B:A.18, B:D.25, B:D.25, B:G.60, B:R.61, B:R.61, B:K.62, B:T.63, B:T.63, B:K.91, B:K.91, B:T.92, B:S.126, B:G.127, B:E.128, B:E.128, B:E.128, B:L.129 Water bridges: B:G.125, B:G.125 Salt bridges: B:R.61, B:K.155

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: S.27, K.62 Ligands: SO4.5 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.27 Salt bridges: A:K.62 SO4.5: 3 residues within 4Å: Chain A: R.61, K.62 Ligands: SO4.4 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.61 Salt bridges: A:R.61, A:K.62 SO4.6: 4 residues within 4Å: Chain A: E.73, H.74, D.76, F.77 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.74, A:D.76, A:F.77 Salt bridges: A:H.74 SO4.7: 2 residues within 4Å: Chain A: K.99, N.100 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.100, A:S.101 SO4.8: 5 residues within 4Å: Chain A: G.193, T.194, A.197, H.198, H.199 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.194, A:H.198 Water bridges: A:T.192 SO4.13: 3 residues within 4Å: Chain B: H.199, H.200, H.201 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.200, B:H.201 Salt bridges: B:H.199 SO4.14: 2 residues within 4Å: Chain B: R.61, K.62 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.61, B:K.62 SO4.15: 3 residues within 4Å: Chain B: W.98, K.99, N.100 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.100 SO4.16: 3 residues within 4Å: Chain B: H.74, D.76, F.77 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.76, B:D.76, B:D.76, B:F.77 SO4.17: 4 residues within 4Å: Chain B: K.155, R.156, G.159, D.160 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.156, B:D.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wangkanont, K., Dihydrofolate reductase-like enzyme from Leptospira interrogans. To Be Published

Release Date

2024-06-26

Peptides

Dihydrofolate reductase family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

Dihydrofolate reductase family protein

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