SMTL ID : 8jt0.4 (4 other biounits)

Dihydrofolate reductase-like enzyme from Leptospira interrogans with additional NADP+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

3 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 8 residues within 4Å: Chain A: E.24, I.66, F.67, Y.70, W.71, W.78, W.124 Ligands: NAP.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.70 1PE.9: 9 residues within 4Å: Chain B: F.9, E.24, M.52, I.66, F.67, Y.70, W.71, W.78 Ligands: NAP.11 No protein-ligand interaction detected (PLIP) 1PE.10: 3 residues within 4Å: Chain B: L.104, D.109, S.116 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.116

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: E.24, K.62, T.63, I.66 Ligands: NAP.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.62 Hydrogen bonds: A:E.24, A:K.62

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.3: 26 residues within 4Å: Chain A: L.7, S.8, F.9, M.16, Q.17, A.18, P.19, E.24, D.25, G.60, R.61, K.62, T.63, M.89, S.90, K.91, T.92, G.125, S.126, G.127, E.128, L.129, L.132, K.155 Ligands: 1PE.1, ACT.2 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:P.19 Hydrogen bonds: A:F.9, A:M.16, A:A.18, A:E.24, A:D.25, A:D.25, A:G.60, A:R.61, A:R.61, A:K.62, A:T.63, A:S.90, A:K.91, A:T.92, A:S.126, A:G.127, A:E.128, A:E.128, A:L.129 Water bridges: A:K.91, A:G.125, A:E.128, A:L.132 Salt bridges: A:R.61, A:K.62, A:K.155 NAP.11: 24 residues within 4Å: Chain B: S.8, F.9, M.16, Q.17, A.18, P.19, E.24, D.25, G.60, R.61, K.62, T.63, M.89, S.90, K.91, T.92, G.125, S.126, G.127, E.128, L.129, L.132, K.155 Ligands: 1PE.9 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:P.19 Hydrogen bonds: B:F.9, B:M.16, B:A.18, B:D.25, B:G.60, B:R.61, B:R.61, B:K.62, B:T.63, B:K.91, B:T.92, B:S.126, B:G.127, B:E.128, B:E.128, B:L.129 Water bridges: B:K.62, B:G.125, B:G.125, B:E.128, B:L.132 Salt bridges: B:R.61, B:K.155

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: K.99, N.100 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.100 Water bridges: A:S.101, A:S.101 SO4.5: 2 residues within 4Å: Chain A: G.193, T.194 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.194, A:T.194 SO4.6: 4 residues within 4Å: Chain A: K.91, S.106, L.107, A.108 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.107, A:A.108 Water bridges: A:K.91, A:K.91 Salt bridges: A:K.91 SO4.7: 3 residues within 4Å: Chain A: G.154, K.155, R.156 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.156 Water bridges: A:D.160 SO4.8: 2 residues within 4Å: Chain A: N.152, T.153 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.153 Water bridges: A:G.154, A:G.154 SO4.12: 2 residues within 4Å: Chain B: G.188, E.189 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wangkanont, K., Dihydrofolate reductase-like enzyme from Leptospira interrogans with additional NADP+. To Be Published

Release Date

2024-06-26

Peptides

Dihydrofolate reductase family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

Dihydrofolate reductase family protein

Related Entries With Identical Sequence