SMTL ID : 8jt0.3 (4 other biounits)

Dihydrofolate reductase-like enzyme from Leptospira interrogans with additional NADP+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

3 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 8 residues within 4Å: Chain A: F.9, M.52, F.67, W.71, F.77, W.78, W.124 Chain B: V.195 No protein-ligand interaction detected (PLIP) 1PE.2: 8 residues within 4Å: Chain A: T.85, Y.87, V.102, F.103, L.104, K.112, L.113, S.116 No protein-ligand interaction detected (PLIP) 1PE.9: 4 residues within 4Å: Chain B: Y.87, L.104, D.109, L.113 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.87

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.3: 25 residues within 4Å: Chain A: S.8, F.9, M.16, Q.17, A.18, P.19, E.24, D.25, G.60, R.61, K.62, T.63, I.66, M.89, S.90, K.91, T.92, G.125, S.126, G.127, E.128, L.129, L.132, K.155 Ligands: SO4.8 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:P.19 Hydrogen bonds: A:F.9, A:M.16, A:A.18, A:D.25, A:G.60, A:R.61, A:R.61, A:K.62, A:T.63, A:K.91, A:T.92, A:S.126, A:E.128, A:E.128, A:L.129 Water bridges: A:G.125, A:G.125, A:E.128, A:L.132, A:L.132 Salt bridges: A:R.61, A:K.62, A:K.155 NAP.10: 24 residues within 4Å: Chain B: S.8, F.9, M.16, Q.17, A.18, P.19, E.24, D.25, G.60, R.61, K.62, T.63, M.89, S.90, K.91, T.92, G.125, S.126, G.127, E.128, L.129, L.132, K.155 Ligands: SO4.12 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:P.19 Hydrogen bonds: B:F.9, B:M.16, B:A.18, B:E.24, B:D.25, B:D.25, B:G.60, B:R.61, B:R.61, B:K.62, B:T.63, B:T.63, B:K.91, B:T.92, B:S.126, B:E.128, B:E.128, B:L.129 Water bridges: B:G.125, B:L.132 Salt bridges: B:R.61, B:K.155

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: E.73, H.74, A.75, D.76, F.77 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.73, A:D.76, A:D.76, A:F.77 Salt bridges: A:H.74 SO4.5: 3 residues within 4Å: Chain A: K.99, N.100, S.101 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.100, A:S.101 Water bridges: A:S.96, A:W.98 SO4.6: 2 residues within 4Å: Chain A: T.153, G.154 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.154 Water bridges: A:K.155 SO4.7: 2 residues within 4Å: Chain A: S.27, G.28 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.28 SO4.8: 3 residues within 4Å: Chain A: R.61, K.62 Ligands: NAP.3 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.61, A:K.62 SO4.11: 3 residues within 4Å: Chain B: G.188, E.189, K.191 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.189 Water bridges: B:A.187, B:E.189, B:E.189, B:E.189 Salt bridges: B:K.191 SO4.12: 5 residues within 4Å: Chain B: K.91, E.105, S.106, L.107 Ligands: NAP.10 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.107 Water bridges: B:A.108 Salt bridges: B:K.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wangkanont, K., Dihydrofolate reductase-like enzyme from Leptospira interrogans with additional NADP+. To Be Published

Release Date

2024-06-26

Peptides

Dihydrofolate reductase family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
E

Dihydrofolate reductase family protein

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