SMTL ID : 8jt0.5 (4 other biounits)

Dihydrofolate reductase-like enzyme from Leptospira interrogans with additional NADP+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

4 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 9 residues within 4Å: Chain A: E.24, M.52, I.66, F.67, Y.70, W.71, W.124 Chain B: V.195 Ligands: NAP.3 No protein-ligand interaction detected (PLIP) 1PE.8: 10 residues within 4Å: Chain B: E.24, M.48, M.52, F.67, Y.70, W.71, W.78, W.124 Ligands: 1PE.9, NAP.11 No protein-ligand interaction detected (PLIP) 1PE.9: 12 residues within 4Å: Chain B: F.9, T.36, Y.39, E.40, D.41, E.42, S.44, G.45, M.48, K.145, F.147 Ligands: 1PE.8 No protein-ligand interaction detected (PLIP) 1PE.10: 5 residues within 4Å: Chain B: Y.87, F.103, L.104, D.109, S.116 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.116

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: E.23, D.25, T.26 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.25, A:T.26 Water bridges: A:S.27

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.3: 24 residues within 4Å: Chain A: S.8, F.9, M.16, Q.17, A.18, P.19, E.24, D.25, G.60, R.61, K.62, T.63, M.89, S.90, K.91, T.92, G.125, S.126, G.127, E.128, L.129, L.132, K.155 Ligands: 1PE.1 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:P.19 Hydrogen bonds: A:F.9, A:M.16, A:A.18, A:E.24, A:D.25, A:D.25, A:G.60, A:R.61, A:R.61, A:K.62, A:T.63, A:T.63, A:S.90, A:K.91, A:T.92, A:T.92, A:S.126, A:G.127, A:E.128, A:E.128, A:L.129 Water bridges: A:K.91, A:G.125, A:E.128, A:L.132 Salt bridges: A:R.61, A:K.155 NAP.11: 24 residues within 4Å: Chain B: S.8, F.9, M.16, Q.17, A.18, P.19, E.24, D.25, G.60, R.61, K.62, T.63, M.89, S.90, K.91, T.92, G.125, S.126, G.127, E.128, L.129, L.132, K.155 Ligands: 1PE.8 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:P.19 Hydrogen bonds: B:F.9, B:M.16, B:A.18, B:D.25, B:D.25, B:G.60, B:R.61, B:K.62, B:T.63, B:T.63, B:K.91, B:T.92, B:T.92, B:S.126, B:G.127, B:E.128, B:E.128, B:L.129 Water bridges: B:G.125 Salt bridges: B:R.61, B:K.62, B:K.155

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: S.27, K.62 Ligands: SO4.5 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.27, A:K.62 Salt bridges: A:K.62 SO4.5: 3 residues within 4Å: Chain A: R.61, K.62 Ligands: SO4.4 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.62 Salt bridges: A:R.61, A:K.62 SO4.6: 5 residues within 4Å: Chain A: G.193, T.194, A.197, H.198, H.199 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.194 Salt bridges: A:H.199 SO4.7: 4 residues within 4Å: Chain A: W.98, K.99, N.100, S.101 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.100, A:S.101 SO4.12: 3 residues within 4Å: Chain B: H.199, H.200, H.201 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.200, B:H.201 Salt bridges: B:H.199, B:H.200, B:H.201 SO4.13: 2 residues within 4Å: Chain B: R.61, K.62 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.61, B:K.62 SO4.14: 2 residues within 4Å: Chain B: K.99, N.100 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.100 Salt bridges: B:K.99 SO4.15: 2 residues within 4Å: Chain B: G.193, T.194 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.194, B:T.194 SO4.16: 3 residues within 4Å: Chain B: H.74, D.76, F.77 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.76, B:F.77 Salt bridges: B:H.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wangkanont, K., Dihydrofolate reductase-like enzyme from Leptospira interrogans with additional NADP+. To Be Published

Release Date

2024-06-26

Peptides

Dihydrofolate reductase family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

Dihydrofolate reductase family protein

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