SMTL ID : 8opv.1

Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with Resveratrol (Fragment-B-H11)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-2-2-mer

Ligands

20 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: P.275, G.309, Q.310, V.311 Ligand excluded by PLIP SO4.2: 3 residues within 4Å: Chain A: P.647, L.648 Chain D: H.243 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: Q.289, V.290, D.291 Chain C: H.24 Ligand excluded by PLIP SO4.4: 2 residues within 4Å: Chain A: S.674, T.675 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain B: P.647, L.648 Chain C: H.243 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain B: T.673, S.674, T.675, A.676 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain B: P.275, G.309, Q.310, V.311 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain B: T.708, G.709, K.710, A.711 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain C: S.163, R.164, N.249, V.251 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain C: R.195, L.201 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain C: N.380, R.382, R.402 Ligand excluded by PLIP SO4.17: 1 residues within 4Å: Chain C: R.382 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain C: K.41, P.193, R.195 Ligand excluded by PLIP SO4.19: 2 residues within 4Å: Chain C: T.317, V.318 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain D: S.163, R.164, N.249 Ligand excluded by PLIP SO4.21: 2 residues within 4Å: Chain D: R.195, L.201 Ligand excluded by PLIP SO4.22: 2 residues within 4Å: Chain D: R.382, R.402 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain B: V.290, D.291 Chain D: H.24 Ligand excluded by PLIP SO4.24: 1 residues within 4Å: Chain D: R.382 Ligand excluded by PLIP SO4.25: 2 residues within 4Å: Chain D: P.193, R.195 Ligand excluded by PLIP

4 x STL: RESVERATROL(Non-covalent)

STL.5: 10 residues within 4Å: Chain A: M.46, N.47, E.48, T.88, M.89, G.131, G.132, E.135, E.157, F.303 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.88, A:F.303 Hydrogen bonds: A:E.48, A:E.157 Water bridges: A:G.132 STL.6: 10 residues within 4Å: Chain A: A.82, G.83, L.130, P.156, E.157, T.159, L.160, R.191, F.319, L.323 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.156, A:L.160, A:L.160, A:F.319, A:L.323 Hydrogen bonds: A:E.157 STL.12: 9 residues within 4Å: Chain B: M.46, T.88, M.89, V.100, G.132, E.135, E.157, G.165, F.303 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:M.46, B:T.88, B:F.303, B:F.303 Hydrogen bonds: B:G.165 Water bridges: B:G.132 STL.13: 10 residues within 4Å: Chain B: A.82, G.83, L.130, P.156, E.157, T.159, L.160, R.191, F.319, L.323 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:P.156, B:L.160, B:F.319, B:L.323 Water bridges: B:G.132, B:E.157

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 4 residues within 4Å: Chain A: S.528, G.532, L.571, I.579 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dalwani, S. et al., Crystallographic fragment-binding studies of the Mycobacterium tuberculosis trifunctional enzyme suggest binding pockets for the tails of the acyl-CoA substrates at its active sites and a potential substrate-channeling path between them. Acta Crystallogr D Struct Biol (2024)

Release Date

2024-01-24

Peptides

3-hydroxyacyl-CoA dehydrogenase: AB
Putative acyltransferase Rv0859: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-hydroxyacyl-CoA dehydrogenase

Putative acyltransferase Rv0859

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