- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 24 x SO4: SULFATE ION(Non-functional Binders)
- 12 x W3U: 1-benzyl-1H-pyrazole-4-carboxylic acid(Non-covalent)
W3U.5: 8 residues within 4Å:- Chain A: P.273, M.274, P.275, R.278, G.309, Q.310, V.311
- Chain D: Y.142
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:P.275, A:P.275, A:V.311
- Hydrogen bonds: A:R.278
W3U.6: 12 residues within 4Å:- Chain A: M.46, D.85, T.88, M.89, V.100, T.103, V.104, I.107, E.135, E.157, G.165, G.166
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:E.157
- Hydrogen bonds: A:D.85, A:V.100
W3U.7: 10 residues within 4Å:- Chain A: Q.179, F.182, V.183, I.257, S.260, F.261, N.264
- Chain D: L.231, G.232
- Ligands: W3U.10
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain D- Hydrophobic interactions: A:Q.179, A:F.182, A:V.183, A:F.261, A:N.264
- Hydrogen bonds: A:S.260, D:G.232
- pi-Stacking: A:F.261
W3U.8: 8 residues within 4Å:- Chain A: R.174, Y.242, M.244, T.248, Q.289, V.290, D.291
- Chain C: H.24
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:D.291
- Water bridges: A:M.244
- Salt bridges: A:R.174
W3U.9: 7 residues within 4Å:- Chain A: S.528, G.532, N.536, L.571, L.575, M.576, I.579
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:I.579
W3U.10: 8 residues within 4Å:- Chain A: V.183, A.187, Q.188, N.264, Q.268, L.269, M.274
- Ligands: W3U.7
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:V.183, A:Q.188, A:Q.268
- Hydrogen bonds: A:Q.268
W3U.19: 5 residues within 4Å:- Chain B: A.187, Q.188, Q.268, L.269
- Ligands: W3U.20
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:Q.268
W3U.20: 9 residues within 4Å:- Chain B: Q.179, F.182, V.183, I.257, S.260, F.261, N.264
- Chain C: L.231
- Ligands: W3U.19
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:F.182, B:V.183, B:F.261, B:N.264
- pi-Stacking: B:F.261, B:F.261
W3U.21: 7 residues within 4Å:- Chain B: P.275, R.278, S.305, G.309, Q.310, V.311
- Chain C: D.143
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:P.275
- Water bridges: B:P.275, B:R.278, B:R.278
- Salt bridges: B:R.278
W3U.22: 11 residues within 4Å:- Chain B: M.46, T.88, M.89, V.100, T.103, V.104, I.107, E.135, E.157, G.165, F.303
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:E.157
W3U.23: 5 residues within 4Å:- Chain B: F.176, N.180, S.184, K.196, I.200
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:F.176, B:N.180
- Salt bridges: B:K.196
- pi-Stacking: B:F.176
W3U.24: 6 residues within 4Å:- Chain B: S.528, I.531, G.532, N.536, M.576, I.579
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:I.579
- Hydrogen bonds: B:N.536
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dalwani, S. et al., Crystallographic fragment binding studies of the Mycobacterium tuberculosis trifunctional enzyme suggest binding pockets for the tails of the acyl-CoA substrates at its active sites and a potential substrate channeling path between them. Biorxiv (2024)
- Release Date
- 2024-01-24
- Peptides
- 3-hydroxyacyl-CoA dehydrogenase: AB
Putative acyltransferase Rv0859: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 24 x SO4: SULFATE ION(Non-functional Binders)
- 12 x W3U: 1-benzyl-1H-pyrazole-4-carboxylic acid(Non-covalent)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dalwani, S. et al., Crystallographic fragment binding studies of the Mycobacterium tuberculosis trifunctional enzyme suggest binding pockets for the tails of the acyl-CoA substrates at its active sites and a potential substrate channeling path between them. Biorxiv (2024)
- Release Date
- 2024-01-24
- Peptides
- 3-hydroxyacyl-CoA dehydrogenase: AB
Putative acyltransferase Rv0859: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D