- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 15 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 4 residues within 4Å:- Chain A: P.275, G.309, Q.310, V.311
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.310, A:V.311
SO4.3: 3 residues within 4Å:- Chain A: P.647, L.648
- Chain D: H.243
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain A- Salt bridges: D:H.243
- Hydrogen bonds: A:L.648
SO4.4: 3 residues within 4Å:- Chain A: H.8, H.9, H.10
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:H.7, A:H.9, A:H.10
- Salt bridges: A:H.8
SO4.8: 4 residues within 4Å:- Chain B: P.275, G.309, Q.310, V.311
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Q.310, B:V.311
- Water bridges: B:G.309, B:G.309
SO4.9: 2 residues within 4Å:- Chain B: P.236, K.239
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:K.239
SO4.10: 4 residues within 4Å:- Chain B: P.646, P.647, L.648
- Chain C: H.243
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain B- Salt bridges: C:H.243
- Hydrogen bonds: B:L.648
SO4.15: 4 residues within 4Å:- Chain C: S.163, R.164, N.249, V.251
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.164, C:N.249
SO4.16: 1 residues within 4Å:- Chain C: R.382
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.382
SO4.17: 3 residues within 4Å:- Chain C: N.380, R.382, R.402
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.380
- Salt bridges: C:R.382, C:R.402
SO4.18: 4 residues within 4Å:- Chain C: Q.18, K.19, N.20, H.24
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:N.20
- Salt bridges: C:H.24
- Water bridges: A:D.291
SO4.20: 2 residues within 4Å:- Chain D: N.380, R.402
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.380
- Salt bridges: D:R.402
SO4.21: 4 residues within 4Å:- Chain D: S.163, R.164, N.249, V.251
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.164, D:N.249, D:N.249
SO4.22: 2 residues within 4Å:- Chain D: R.195, L.201
2 PLIP interactions:2 interactions with chain D- Water bridges: D:L.201
- Salt bridges: D:R.195
SO4.23: 2 residues within 4Å:- Chain D: R.382, R.402
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:R.402
- Salt bridges: D:R.382
SO4.24: 4 residues within 4Å:- Chain D: Q.18, K.19, N.20, H.24
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:Q.18, D:N.20
- Water bridges: D:G.21
- Salt bridges: D:H.24
- 8 x VXH: pyridine-3-sulfonic acid
VXH.5: 8 residues within 4Å:- Chain A: G.83, G.84, L.130, G.131, P.156, E.157, L.160, R.191
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.83, A:G.84, A:G.132, A:E.157
VXH.6: 7 residues within 4Å:- Chain A: F.182, V.183, A.187, Q.188, L.265, Q.268, L.269
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:A.187, A:L.265, A:L.269
- Hydrogen bonds: A:Q.268
VXH.11: 9 residues within 4Å:- Chain B: G.83, G.84, L.130, G.131, G.132, P.156, E.157, L.160, R.191
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:G.84, B:L.130, B:G.132, B:E.157, B:R.191
VXH.12: 4 residues within 4Å:- Chain B: P.596, G.725, D.726, R.727
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.726, B:R.727
- Salt bridges: B:R.727
VXH.13: 5 residues within 4Å:- Chain B: T.88, M.89, A.92, V.100, T.103
No protein-ligand interaction detected (PLIP)VXH.14: 7 residues within 4Å:- Chain B: F.182, V.183, A.187, Q.188, L.265, Q.268, L.269
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:A.187, B:L.265, B:L.269
VXH.19: 5 residues within 4Å:- Chain C: T.158, W.244, V.245, E.246, K.247
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:W.244, C:E.246, C:K.247
VXH.25: 4 residues within 4Å:- Chain D: T.158, V.245, E.246, K.247
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:E.246, D:K.247
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dalwani, S. et al., Crystallographic fragment binding studies of the Mycobacterium tuberculosis trifunctional enzyme suggest binding pockets for the tails of the acyl-CoA substrates at its active sites and a potential substrate channeling path between them. Biorxiv (2024)
- Release Date
- 2024-01-24
- Peptides
- 3-hydroxyacyl-CoA dehydrogenase: AB
Putative acyltransferase Rv0859: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 15 x SO4: SULFATE ION(Non-functional Binders)
- 8 x VXH: pyridine-3-sulfonic acid
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dalwani, S. et al., Crystallographic fragment binding studies of the Mycobacterium tuberculosis trifunctional enzyme suggest binding pockets for the tails of the acyl-CoA substrates at its active sites and a potential substrate channeling path between them. Biorxiv (2024)
- Release Date
- 2024-01-24
- Peptides
- 3-hydroxyacyl-CoA dehydrogenase: AB
Putative acyltransferase Rv0859: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D