SMTL ID : 8orm.1

Cryo-EM structure of CAK-THZ1

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x V0G: N-(3-{[5-chloro-4-(1H-indol-3-yl)pyrimidin-2-yl]amino}phenyl)-4-{[4-(dimethylamino)butanoyl]amino}benzamide(Covalent)

V0G.1: 16 residues within 4Å: Chain C: L.21, E.23, V.29, A.42, K.44, F.94, D.95, F.96, M.97, E.98, T.99, L.147, D.158, P.313, N.314, C.315 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:L.21, C:L.21, C:V.29, C:F.96 Hydrogen bonds: C:K.44, C:M.97, C:M.97, C:D.158, C:C.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cushing, V.I. et al., High-resolution cryo-EM of the human CDK-activating kinase for structure-based drug design. Nat Commun (2024)

Release Date

2023-08-30

Peptides

CDK-activating kinase assembly factor MAT1: A
Cyclin-H: B
Cyclin-dependent kinase 7: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
I

C
J

CDK-activating kinase assembly factor MAT1

Cyclin-H

Cyclin-dependent kinase 7

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