SMTL ID : 8owc.1

Crystal structure of Hen Egg White Lysozyme co-crystallized with 10 mM TbXo4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x TB: TERBIUM(III) ION(Non-covalent)

TB.1: 2 residues within 4Å: Chain A: D.119 Ligands: 7MT.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.119, A:D.119

1 x 7MT: Tb-Xo4(Non-covalent)

7MT.2: 7 residues within 4Å: Chain A: W.80, W.81, R.91, L.93, D.119, N.121 Ligands: TB.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.93 Hydrogen bonds: A:D.119 Water bridges: A:G.120, A:G.120 Salt bridges: A:D.119, A:D.119

7 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: Y.41, G.122 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: S.42, G.44, V.138, Q.139, I.142 Ligand excluded by PLIP CL.5: 6 residues within 4Å: Chain A: F.21, A.29, R.32, H.33, D.105, I.106 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: R.23, K.51, F.56, W.141 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: P.88, G.89, S.90 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain A: N.83, G.85, R.86, T.87, S.90 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain A: Q.75, I.76, N.77, W.81, I.116 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.10: 6 residues within 4Å: Chain A: S.78, C.82, N.83, T.87, S.90, R.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.90, A:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roux, A. et al., Influence of Chemical Modifications of the Crystallophore on Protein Nucleating Properties and Supramolecular Interactions Network. Chemistry (2024)

Release Date

2024-07-17

Peptides

Lysozyme C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme C

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