SMTL ID : 8piw.1

Crystal structure of Hen Egg White Lysozyme co-crystallized with 10 mM TbXo4-NMet2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x TB: TERBIUM(III) ION(Non-covalent)

TB.1: 2 residues within 4Å: Chain A: D.119 Ligands: ZHT.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.119, A:D.119

1 x ZHT: 6-[[4-[(6-carboxypyridin-2-yl)methyl]-7-[3-(dimethylamino)propyl]-1,4,7-triazonan-1-yl]methyl]pyridine-2-carboxylic acid(Non-covalent)

ZHT.2: 7 residues within 4Å: Chain A: W.80, W.81, L.93, D.119, G.120, N.121 Ligands: TB.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.120 Water bridges: A:N.121 Salt bridges: A:D.119, A:D.119, A:D.119

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: R.39, Y.41, G.122 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain A: S.42, L.43, G.44, V.138, Q.139, I.142 Ligand excluded by PLIP CL.5: 6 residues within 4Å: Chain A: F.21, A.29, R.32, H.33, D.105, I.106 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: N.83, G.85, R.86, T.87, S.90 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: R.91, N.92, L.93 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain A: R.23, K.51, F.56, W.141 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.9: 7 residues within 4Å: Chain A: S.78, C.82, N.83, D.84, T.87, S.90, R.91 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roux, A. et al., Influence of Chemical Modifications of the Crystallophore on Protein Nucleating Properties and Supramolecular Interactions Network. Chemistry (2024)

Release Date

2024-07-10

Peptides

Lysozyme C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme C

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