SMTL ID : 8p75.1

Cryo-EM structure of CAK in complex with inhibitor ICEC0880 (ring-down conformation)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x X3Z: (2S,3S)-3-[[7-[(2-bromophenyl)methylamino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]butane-1,2,4-triol(Non-covalent)

X3Z.1: 14 residues within 4Å: Chain C: L.21, G.22, V.29, A.42, F.94, D.95, F.96, M.97, E.98, T.99, N.144, N.145, L.147, D.158 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:L.21, C:V.29, C:A.42, C:F.94, C:F.94, C:F.96 Hydrogen bonds: C:M.97, C:M.97 Water bridges: C:D.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cushing, V.I. et al., High-resolution cryo-EM of the human CDK-activating kinase for structure-based drug design. Nat Commun (2024)

Release Date

2024-03-20

Peptides

CDK-activating kinase assembly factor MAT1: A
Cyclin-H: B
Cyclin-dependent kinase 7: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
I

C
J

CDK-activating kinase assembly factor MAT1

Cyclin-H

Cyclin-dependent kinase 7

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