SMTL ID : 8p78.1

Cryo-EM structure of CAK in complex with inhibitor dinaciclib

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x 1QK: 3-[({3-ethyl-5-[(2S)-2-(2-hydroxyethyl)piperidin-1-yl]pyrazolo[1,5-a]pyrimidin-7-yl}amino)methyl]-1-hydroxypyridinium(Non-covalent)

1QK.1: 13 residues within 4Å: Chain C: L.21, G.22, V.29, A.42, K.44, F.94, D.95, F.96, M.97, E.98, T.99, D.100, L.147 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:A.42, C:F.94, C:L.147 Hydrogen bonds: C:M.97, C:M.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cushing, V.I. et al., High-resolution cryo-EM of the human CDK-activating kinase for structure-based drug design. Nat Commun (2024)

Release Date

2024-03-20

Peptides

CDK-activating kinase assembly factor MAT1: A
Cyclin-H: B
Cyclin-dependent kinase 7: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
I

C
J

CDK-activating kinase assembly factor MAT1

Cyclin-H

Cyclin-dependent kinase 7

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