- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.23 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 23 x SO4: SULFATE ION(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 1 x YMK: (2~{R})-3-bis[2-methyl-5-(trifluoromethyl)pyrazol-3-yl]boranyloxypropane-1,2-diol(Non-covalent)
- 2 x YLZ: [(2~{R})-2,3-bis(oxidanyl)propoxy]-[2-methyl-5-(trifluoromethyl)pyrazol-3-yl]borinic acid(Non-covalent)
YLZ.7: 8 residues within 4Å:- Chain A: A.187, Q.188, L.265, Q.268, L.269, A.272, M.274
- Ligands: JXL.10
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.269
- Halogen bonds: A:A.187
YLZ.16: 9 residues within 4Å:- Chain B: A.187, Q.188, L.265, Q.268, L.269, A.272, M.274, G.559
- Ligands: JXL.20
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.559
- Halogen bonds: B:A.187
- 2 x YLN: bis[2-methyl-5-(trifluoromethyl)pyrazol-3-yl]-bis(oxidanyl)boranuide(Covalent)
YLN.8: 12 residues within 4Å:- Chain A: H.7, M.46, N.47, E.48, I.51, D.85, T.88, D.96, D.99, V.100, T.103
- Ligands: JXL.11
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:T.88, A:T.103
YLN.17: 13 residues within 4Å:- Chain B: H.7, H.8, M.46, N.47, E.48, I.51, D.85, T.88, D.96, D.99, V.100, T.103
- Ligands: JXL.21
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:T.103
- Hydrogen bonds: B:T.88, B:D.99
- Halogen bonds: B:D.96
- 6 x JXL: [2-methyl-5-(trifluoromethyl)pyrazol-3-yl]boronic acid(Non-covalent)
JXL.9: 8 residues within 4Å:- Chain A: A.82, G.83, L.130, G.131, P.156, L.160, F.320
- Ligands: YMK.6
No protein-ligand interaction detected (PLIP)JXL.10: 6 residues within 4Å:- Chain A: F.182, V.183, A.187, L.265, Q.268
- Ligands: YLZ.7
No protein-ligand interaction detected (PLIP)JXL.11: 9 residues within 4Å:- Chain A: M.46, G.84, D.85, T.88, M.89, V.100, T.103, F.303
- Ligands: YLN.8
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.303
- Halogen bonds: A:V.100
JXL.19: 7 residues within 4Å:- Chain B: G.83, L.130, G.131, P.156, L.160, F.320, Q.324
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.324
- Halogen bonds: B:L.130
JXL.20: 5 residues within 4Å:- Chain B: F.182, A.187, L.265, Q.268
- Ligands: YLZ.16
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:Q.268
JXL.21: 11 residues within 4Å:- Chain B: M.46, G.84, D.85, T.88, M.89, V.100, T.103, V.104, I.107, F.303
- Ligands: YLN.17
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:F.303
- Halogen bonds: B:V.100
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dalwani, S. et al., Crystallographic fragment-binding studies of the Mycobacterium tuberculosis trifunctional enzyme suggest binding pockets for the tails of the acyl-CoA substrates at its active sites and a potential substrate-channeling path between them. Acta Crystallogr D Struct Biol (2024)
- Release Date
- 2024-01-24
- Peptides
- Probable fatty oxidation protein FadB: AB
Putative acyltransferase Rv0859: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.23 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 23 x SO4: SULFATE ION(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 1 x YMK: (2~{R})-3-bis[2-methyl-5-(trifluoromethyl)pyrazol-3-yl]boranyloxypropane-1,2-diol(Non-covalent)
- 2 x YLZ: [(2~{R})-2,3-bis(oxidanyl)propoxy]-[2-methyl-5-(trifluoromethyl)pyrazol-3-yl]borinic acid(Non-covalent)
- 2 x YLN: bis[2-methyl-5-(trifluoromethyl)pyrazol-3-yl]-bis(oxidanyl)boranuide(Covalent)
- 6 x JXL: [2-methyl-5-(trifluoromethyl)pyrazol-3-yl]boronic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dalwani, S. et al., Crystallographic fragment-binding studies of the Mycobacterium tuberculosis trifunctional enzyme suggest binding pockets for the tails of the acyl-CoA substrates at its active sites and a potential substrate-channeling path between them. Acta Crystallogr D Struct Biol (2024)
- Release Date
- 2024-01-24
- Peptides
- Probable fatty oxidation protein FadB: AB
Putative acyltransferase Rv0859: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D