SMTL ID : 8pp0.1

Crystal structure of Retinoic Acid Receptor alpha (RXRA) in complexed with JP147

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 7QJ: 3-[4-[2,3-dihydro-1H-inden-4-yl(methyl)amino]-6-(trifluoromethyl)pyrimidin-2-yl]oxypropanoic acid(Non-covalent)

7QJ.1: 17 residues within 4Å: Chain A: I.48, A.51, A.52, Q.55, W.85, N.86, L.89, I.90, F.93, R.96, I.104, L.106, A.107, I.125, F.126, C.212, L.216 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.48, A:Q.55, A:F.93, A:F.93, A:I.125, A:F.126 Hydrogen bonds: A:A.107 Water bridges: A:Q.55, A:S.92, A:F.93 Salt bridges: A:R.96 Halogen bonds: A:N.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lewandowski, M. et al., Structure-Guided Design of a Highly Potent Partial RXR Agonist with Superior Physicochemical Properties. J.Med.Chem. (2024)

Release Date

2024-02-07

Peptides

Retinoic acid receptor RXR-alpha: A
Nuclear receptor coactivator 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Retinoic acid receptor RXR-alpha

Nuclear receptor coactivator 2

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