SMTL ID : 8q1j.1

LSD1 Y391K-CoREST bound to Acetylated K14 of Histone H3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.87 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 37 residues within 4Å: Chain A: G.163, S.164, G.165, V.166, S.167, L.185, E.186, A.187, R.188, G.192, G.193, R.194, V.195, L.207, G.208, A.209, M.210, V.211, T.466, A.467, V.468, T.502, L.503, P.504, V.515, L.537, K.539, W.629, W.634, S.638, Y.639, G.678, E.679, T.688, V.689, A.692 Chain C: M.4 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:L.537 Hydrogen bonds: A:S.164, A:G.165, A:V.166, A:S.167, A:S.167, A:S.167, A:G.168, A:A.187, A:R.188, A:R.188, A:G.192, A:G.193, A:R.194, A:A.209, A:M.210, A:V.211, A:V.211, A:V.468, A:V.468, A:E.679, A:V.689 Salt bridges: A:R.194, A:R.194 pi-Stacking: A:W.634, A:Y.639

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, K. et al., Uncoupling histone modification crosstalk by engineering lysine demethylase LSD1. Nat.Chem.Biol. (2024)

Release Date

2024-05-15

Peptides

Lysine-specific histone demethylase 1A: A
REST corepressor 1: B
Histone H3.3C: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Lysine-specific histone demethylase 1A

REST corepressor 1

Histone H3.3C

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