SMTL ID : 8q6m.1

Human SOD1 low dose data collecton

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-dimer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: E.50, H.64, F.65, N.66, P.67, R.116 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.65, A:P.67 Hydrogen bonds: A:N.66

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.64, H.72, H.81, D.84 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.64, A:H.72, A:H.81, A:D.84, A:D.84 ZN.6: 5 residues within 4Å: Chain B: H.64, H.72, H.81, D.84, K.137 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.64, B:H.72, B:H.81, B:D.84

2 x CU: COPPER (II) ION(Non-covalent)

CU.3: 5 residues within 4Å: Chain A: H.47, H.49, H.64, V.119, H.121 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.47, A:H.49, A:H.121 CU.7: 5 residues within 4Å: Chain B: H.47, H.49, H.64, V.119, H.121 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.47, B:H.49, B:H.121

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: E.134, T.138, N.140, A.141, G.142 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.138, A:G.142 Water bridges: A:G.142 SO4.5: 3 residues within 4Å: Chain A: T.59, S.143, R.144 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.144, A:R.144 Water bridges: A:T.59, A:T.59, A:S.143, A:S.143, A:R.144, A:R.144 SO4.8: 5 residues within 4Å: Chain B: E.134, T.138, N.140, A.141, G.142 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.138, B:T.138, B:G.142 Water bridges: B:G.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hossain, M.A. et al., Evaluating protein cross-linking as a therapeutic strategy to stabilize SOD1 variants in a mouse model of familial ALS. Plos Biol. (2024)

Release Date

2023-12-13

Peptides

Superoxide dismutase [Cu-Zn]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Superoxide dismutase [Cu-Zn]

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