SMTL ID : 8qix.1

Structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-hexamer

Ligands

4 x VJ7: 3-(3-methylindol-1-yl)-~{N}-(4-phenoxyphenyl)sulfonyl-propanamide(Non-covalent)

VJ7.1: 15 residues within 4Å: Chain B: P.8, G.9, S.10, H.18, V.21, F.22, A.35, L.37, G.70, Q.71, G.72, L.74, V.87, K.88, G.89 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:V.21, B:V.21, B:F.22, B:A.35, B:L.37, B:L.37, B:L.74 Hydrogen bonds: B:S.10, B:K.88 Water bridges: B:F.11 pi-Stacking: B:H.18 VJ7.2: 17 residues within 4Å: Chain C: C.7, P.8, G.9, S.10, G.17, H.18, V.21, F.22, A.35, V.36, L.37, G.70, Q.71, G.72, L.74, K.88, G.89 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:V.21, C:V.21, C:F.22, C:A.35, C:L.37, C:L.37, C:L.74, C:L.74 Hydrogen bonds: C:S.10, C:K.88 Water bridges: C:F.11 pi-Stacking: C:H.18, C:H.18 VJ7.3: 15 residues within 4Å: Chain E: P.8, G.9, S.10, H.18, V.21, F.22, A.35, L.37, G.70, Q.71, G.72, L.74, V.87, K.88, G.89 11 PLIP interactions: 11 interactions with chain E Hydrophobic interactions: E:V.21, E:V.21, E:F.22, E:A.35, E:L.37, E:L.37, E:L.74 Hydrogen bonds: E:S.10, E:K.88 Water bridges: E:F.11 pi-Stacking: E:H.18 VJ7.4: 17 residues within 4Å: Chain F: C.7, P.8, G.9, S.10, G.17, H.18, V.21, F.22, A.35, V.36, L.37, G.70, Q.71, G.72, L.74, K.88, G.89 13 PLIP interactions: 13 interactions with chain F Hydrophobic interactions: F:V.21, F:V.21, F:F.22, F:A.35, F:L.37, F:L.37, F:L.74, F:L.74 Hydrogen bonds: F:S.10, F:K.88 Water bridges: F:F.11 pi-Stacking: F:H.18, F:H.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCarthy, W.J. et al., A Fragment-Based Competitive 19 F LB-NMR Platform For Hotspot-Directed Ligand Profiling. Angew.Chem.Int.Ed.Engl. (2024)

Release Date

2024-07-24

Peptides

Phosphopantetheine adenylyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Phosphopantetheine adenylyltransferase

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