SMTL ID : 8qj8.1

Structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

homo-hexamer

Ligands

6 x VIW: 3-[3-(3-azanyl-2-cyano-phenyl)indol-1-yl]propanoic acid(Non-covalent)

VIW.1: 16 residues within 4Å: Chain A: C.7, P.8, G.9, S.10, F.11, T.15, G.17, H.18, V.21, K.88, G.89, R.91, T.119, Y.123, V.126, S.127 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.11, A:V.21, A:V.21, A:R.91 Hydrogen bonds: A:S.10, A:F.11, A:T.15, A:Y.123 Water bridges: A:S.128, A:S.128 Salt bridges: A:H.18 pi-Stacking: A:H.18 VIW.2: 16 residues within 4Å: Chain B: C.7, P.8, G.9, S.10, F.11, T.15, G.17, H.18, V.21, K.88, G.89, R.91, T.119, Y.123, V.126, S.127 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:F.11, B:V.21, B:K.88, B:R.91 Hydrogen bonds: B:S.10, B:F.11, B:Y.123 Water bridges: B:K.88, B:K.88, B:S.128 Salt bridges: B:H.18, B:K.88 pi-Cation interactions: B:H.18 VIW.3: 16 residues within 4Å: Chain C: C.7, P.8, G.9, S.10, F.11, T.15, G.17, H.18, V.21, K.88, G.89, R.91, T.119, Y.123, V.126, S.127 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:F.11, C:V.21, C:K.88, C:R.91 Hydrogen bonds: C:S.10, C:F.11, C:T.15, C:Y.123 Water bridges: C:S.10, C:S.128, C:S.128 Salt bridges: C:H.18 pi-Cation interactions: C:H.18 VIW.4: 16 residues within 4Å: Chain D: C.7, P.8, G.9, S.10, F.11, T.15, G.17, H.18, V.21, K.88, G.89, R.91, T.119, Y.123, V.126, S.127 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:F.11, D:V.21, D:V.21, D:R.91 Hydrogen bonds: D:S.10, D:F.11, D:Y.123 Water bridges: D:S.128, D:S.128 Salt bridges: D:H.18 pi-Stacking: D:H.18 VIW.5: 16 residues within 4Å: Chain E: C.7, P.8, G.9, S.10, F.11, T.15, G.17, H.18, V.21, K.88, G.89, R.91, T.119, Y.123, V.126, S.127 14 PLIP interactions: 14 interactions with chain E Hydrophobic interactions: E:F.11, E:V.21, E:K.88, E:R.91 Hydrogen bonds: E:S.10, E:F.11, E:T.15, E:Y.123 Water bridges: E:K.88, E:K.88, E:S.128 Salt bridges: E:H.18, E:K.88 pi-Cation interactions: E:H.18 VIW.6: 16 residues within 4Å: Chain F: C.7, P.8, G.9, S.10, F.11, T.15, G.17, H.18, V.21, K.88, G.89, R.91, T.119, Y.123, V.126, S.127 12 PLIP interactions: 12 interactions with chain F Hydrophobic interactions: F:F.11, F:V.21, F:K.88, F:R.91 Hydrogen bonds: F:S.10, F:F.11, F:Y.123 Water bridges: F:S.10, F:S.128, F:S.128 Salt bridges: F:H.18 pi-Cation interactions: F:H.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCarthy, W.J. et al., A Fragment-Based Competitive 19 F LB-NMR Platform For Hotspot-Directed Ligand Profiling. Angew.Chem.Int.Ed.Engl. (2024)

Release Date

2024-07-24

Peptides

Phosphopantetheine adenylyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Phosphopantetheine adenylyltransferase

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