SMTL ID : 8r82.1

Crystal structure of the hPXR-LBD in complex with compound JMV6944

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 5 residues within 4Å: Chain A: I.155, L.306, E.309, L.310 Ligands: EDO.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.155, A:L.306, A:E.309

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: G.312, I.313, T.314, G.315, S.316 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.314, A:G.315, A:S.316 GOL.3: 5 residues within 4Å: Chain A: H.218, E.219, E.220, Y.258 Ligands: GOL.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.219, A:Y.258, A:Y.258 GOL.4: 5 residues within 4Å: Chain A: T.172, L.217, H.218, E.219 Ligands: GOL.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.218 Water bridges: A:L.217

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain A: K.141, Q.154, I.155 Ligands: IPA.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.141, A:Q.154 Water bridges: A:Q.154 EDO.6: 4 residues within 4Å: Chain A: M.41, K.42, F.44, D.45 No protein-ligand interaction detected (PLIP)

1 x Y7Q: ~{N}-[2-(7-azanylheptyl)-1-(phenylmethyl)benzimidazol-5-yl]-2,4,6-trimethyl-benzenesulfonamide(Non-covalent)

Y7Q.7: 20 residues within 4Å: Chain A: C.89, S.90, L.91, K.92, M.125, S.129, F.133, F.163, Q.167, F.170, W.181, Y.188, L.190, M.205, L.206, H.289, L.293, I.296, M.307, F.311 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.163, A:F.170, A:F.170, A:F.170, A:W.181, A:W.181, A:W.181, A:Y.188, A:Y.188, A:L.190, A:L.206, A:L.206, A:L.293, A:L.293, A:I.296 Hydrogen bonds: A:S.129, A:S.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Delfosse, V. et al., Crystal structure of the hPXR-LBD in complex with compound JMV6944. To Be Published

Release Date

2025-06-11

Peptides

Nuclear receptor subfamily 1 group I member 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor subfamily 1 group I member 2

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