SMTL ID : 8r99.1

A soakable crystal form of human CDK7 in complex with AMP-PNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 13 residues within 4Å: Chain A: L.43, G.44, V.51, A.64, K.66, I.100, F.116, D.117, F.118, M.119, L.169, D.180 Ligands: MG.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.66, A:K.66, A:D.117, A:M.119, A:D.180 Water bridges: A:D.122, A:K.164 Salt bridges: A:K.66

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: N.166, N.167, D.180 Ligands: ANP.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mukherjee, M. et al., Protein engineering enables a soakable crystal form of human CDK7 primed for high-throughput crystallography and structure-based drug design. Structure (2024)

Release Date

2024-05-29

Peptides

Cyclin-dependent kinase 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 7

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