SMTL ID : 8rr3.1

Human mitochondrial RNase Z complex with ELAC2-D550N catalytic mutant and tRNA-Gln precursor (Composite model)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain E: H.518, H.520, H.523, D.638, H.696 Ligands: ZN.2 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.523, E:D.638, E:D.638, E:H.696 ZN.2: 5 residues within 4Å: Chain E: H.518, H.520, H.616, D.638 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.518, E:H.520, E:H.616, E:D.638

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.3: 16 residues within 4Å: Chain F: L.202, T.203, A.204, I.221, G.222, F.224, D.226, Q.230, S.234, L.248, L.250, K.261, N.262, L.263, L.265, M.268 10 PLIP interactions: 10 interactions with chain F Hydrophobic interactions: F:N.262 Hydrogen bonds: F:G.222, F:G.222, F:D.226, F:S.234, F:L.248, F:K.261, F:N.262, F:N.262, F:L.263

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bhatta, A. et al., Structural basis of human mitochondrial and nuclear tRNA 3'-end processing. To Be Published

Release Date

2025-01-08

Peptides

3-hydroxyacyl-CoA dehydrogenase type-2: ABCD
Zinc phosphodiesterase ELAC protein 2: E
tRNA methyltransferase 10 homolog C: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

3-hydroxyacyl-CoA dehydrogenase type-2

Zinc phosphodiesterase ELAC protein 2

tRNA methyltransferase 10 homolog C

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