SMTL ID : 8rst.1

Rap from bacteriophage Phi3T in presence of pheromone SRGHTS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.56 Å

Oligo State

homo-dimer

Ligands

2 x SER- ARG- GLY- HIS- THR- SER: SRGHTS(Non-covalent)

SER-ARG-GLY-HIS-THR-SER.1: 22 residues within 4Å: Chain A: Y.67, Y.144, E.148, Y.151, H.152, Q.182, F.185, V.186, L.189, D.193, L.219, S.222, Y.225, N.226, L.229, Y.251, R.261, D.264, M.268, S.334, D.335, D.338 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Y.151, A:V.186, A:Y.225 Hydrogen bonds: A:Y.144, A:Y.144, A:E.148, A:E.148, A:Y.151, A:Y.151, A:Y.151, A:Q.182, A:Y.225, A:N.226, A:N.226, A:S.334, A:D.335 Salt bridges: A:D.193, A:D.338 SER-ARG-GLY-HIS-THR-SER.5: 22 residues within 4Å: Chain B: Y.67, Y.144, E.148, Y.151, H.152, Q.182, F.185, V.186, L.189, D.193, L.219, S.222, Y.225, N.226, L.229, Y.251, R.261, D.264, M.268, S.334, D.335, D.338 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:Y.151, B:V.186, B:Y.225 Hydrogen bonds: B:Y.67, B:Y.144, B:Y.151, B:Y.151, B:H.152, B:Q.182, B:S.222, B:Y.225, B:N.226, B:N.226, B:D.264, B:S.334, B:D.335, B:D.338, B:D.338 Salt bridges: B:D.193, B:D.338

2 x 01: Glycerol ethoxylate

01.2: 4 residues within 4Å: Chain A: Q.113, E.115, L.329, K.330 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.330 01.6: 4 residues within 4Å: Chain B: Q.113, E.115, L.329, K.330 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.330

4 x FU1: tetrahydrofuran(Non-covalent)

FU1.3: 2 residues within 4Å: Chain A: S.121, F.122 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.122 FU1.4: 2 residues within 4Å: Chain A: S.284, W.285 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.285, A:W.285 Hydrogen bonds: A:S.284 FU1.7: 2 residues within 4Å: Chain B: S.121, F.122 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.122 FU1.8: 2 residues within 4Å: Chain B: S.284, W.285 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:W.285, B:W.285 Hydrogen bonds: B:S.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Felipe-Ruiz, A. et al., Extracellular proteolysis of tandemly duplicated pheromone propeptides affords additional complexity to bacterial quorum sensing. Plos Biol. (2024)

Release Date

2024-07-24

Peptides

Rap3T: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Rap3T

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