SMTL ID : 8rtc.1 (1 other biounit)

Rap from bacteriophage Phi3T in presence of pheromone RGHTS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.83 Å

Oligo State

monomer

Ligands

1 x ARG- GLY- HIS- THR- SER: Pheromone RGHTS(Non-covalent)

ARG-GLY-HIS-THR-SER.1: 23 residues within 4Å: Chain A: Y.67, Y.144, E.148, Y.151, H.152, K.154, Q.182, F.185, V.186, L.189, D.193, R.218, L.219, S.222, Y.225, N.226, L.229, Y.251, R.261, D.264, I.265, S.334, D.335 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:Y.151, A:V.186, A:Y.225 Hydrogen bonds: A:Y.67, A:Y.144, A:Y.151, A:Y.151, A:H.152, A:H.152, A:Q.182, A:R.218, A:S.222, A:N.226, A:N.226, A:D.264, A:S.334, A:D.335 Salt bridges: A:K.145, A:D.193, A:D.338 pi-Stacking: A:Y.225

3 x 01: Glycerol ethoxylate

01.2: 8 residues within 4Å: Chain A: Q.113, Y.114, E.115, E.299, I.300, Y.326, L.329, K.330 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.330 Hydrogen bonds: A:E.299, A:K.330 01.3: 4 residues within 4Å: Chain A: A.358, E.361, K.362, Y.365 No protein-ligand interaction detected (PLIP) 01.4: 4 residues within 4Å: Chain A: D.314, N.315, D.316, E.318 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Felipe-Ruiz, A. et al., Extracellular proteolysis of tandemly duplicated pheromone propeptides affords additional complexity to bacterial quorum sensing. Plos Biol. (2024)

Release Date

2024-07-24

Peptides

Rap3T: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Rap3T

Related Entries With Identical Sequence