SMTL ID : 8rtc.2 (1 other biounit)

Rap from bacteriophage Phi3T in presence of pheromone RGHTS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.83 Å

Oligo State

monomer

Ligands

1 x ARG- GLY- HIS- THR- SER: Pheromone RGHTS(Non-covalent)

ARG-GLY-HIS-THR-SER.1: 22 residues within 4Å: Chain A: Y.67, Y.144, E.148, Y.151, H.152, Q.182, F.185, V.186, L.189, D.193, R.218, L.219, S.222, Y.225, N.226, L.229, Y.251, R.261, D.264, I.265, S.334, D.335 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:Y.151, A:Y.151, A:V.186, A:L.189 Hydrogen bonds: A:Y.67, A:Y.144, A:Y.151, A:Y.151, A:Y.151, A:H.152, A:Q.182, A:S.222, A:S.222, A:N.226, A:N.226, A:D.264, A:S.334, A:D.335 Water bridges: A:D.338 Salt bridges: A:D.193, A:R.218 pi-Stacking: A:Y.225 pi-Cation interactions: A:Y.151

1 x 01: Glycerol ethoxylate

01.2: 6 residues within 4Å: Chain A: Y.114, E.115, E.299, Y.326, L.329, K.330 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.299, A:E.299, A:K.330

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Felipe-Ruiz, A. et al., Extracellular proteolysis of tandemly duplicated pheromone propeptides affords additional complexity to bacterial quorum sensing. Plos Biol. (2024)

Release Date

2024-07-24

Peptides

Rap3T: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Rap3T

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