SMTL ID : 8rut.1

HIF prolyl-hydroxylase-2 (PHD2) T387V variant bound to Fe(III), 2-oxoglutarate (2OG) and Hypoxia-inducible Factor-2alpha (HIF-2alpha)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 8 residues within 4Å: Chain A: K.69, I.71, G.73, G.127, T.128, G.129, Y.130, V.131 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.70, A:G.129

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 17 residues within 4Å: Chain A: R.72, M.119, Y.123, Y.130, H.133, D.135, I.147, Y.149, L.163, H.194, V.196, R.203, A.205, V.207, W.209 Chain B: P.9 Ligands: FE.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.147, A:V.196 Hydrogen bonds: A:Y.149 Water bridges: A:R.72, A:R.203 Salt bridges: A:R.72, A:H.133, A:R.203

1 x FE: FE (III) ION(Non-covalent)

FE.3: 6 residues within 4Å: Chain A: H.133, D.135, F.186, H.194 Chain B: P.9 Ligands: AKG.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.133, A:D.135, A:H.194, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fiorini, G. et al., HIF prolyl hydroxylase 2 (PHD2) T387V variant bound to Hypoxia-inducible Factor 2alpha (HIF-2alpha. To Be Published

Release Date

2025-02-12

Peptides

Egl nine homolog 1: A
Hypoxia-inducible Factor-2alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Egl nine homolog 1

Hypoxia-inducible Factor-2alpha

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