SMTL ID : 8rwd.1

Crystal structure of the adenosine A2A receptor in complex with the synthetic photoswitch 'StilSwitch3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x 01: 1,3-diethyl-8-[(~{E})-2-(4-methoxy-3-oxidanyl-phenyl)ethenyl]-7-methyl-purine-2,6-dione

01.1: 12 residues within 4Å: Chain A: I.91, V.109, L.110, F.193, E.194, M.202, W.367, L.370, N.374, L.388, M.391, I.395 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.91, A:E.194, A:W.367, A:L.370 Hydrogen bonds: A:N.374 pi-Stacking: A:F.193, A:F.193

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 9 residues within 4Å: Chain A: L.212, L.368, I.372, C.375, F.376, F.379, C.380 Ligands: OLA.5, OLA.8 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.212, A:L.368, A:I.372, A:F.376, A:F.376, A:F.376, A:F.379 Water bridges: A:F.379 CLR.3: 13 residues within 4Å: Chain A: L.365, L.368, P.369, I.372, I.373, F.376, C.383, S.384, A.386, L.390 Ligands: OLA.8, OLA.21, OLA.22 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.365, A:L.368, A:P.369, A:I.372, A:I.373, A:F.376, A:L.390 Hydrogen bonds: A:S.384 Water bridges: A:S.384 CLR.4: 8 residues within 4Å: Chain A: F.87, A.97, A.98, G.101, F.104, I.105 Ligands: OLA.6, OLA.26 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.87, A:A.98, A:F.104, A:I.105, A:I.105 Hydrogen bonds: A:A.98 Water bridges: A:Q.188, A:Q.188

26 x OLA: OLEIC ACID(Non-covalent)

OLA.5: 5 residues within 4Å: Chain A: F.208, L.212, F.379 Ligands: CLR.2, OLA.25 Ligand excluded by PLIP OLA.6: 9 residues within 4Å: Chain A: V.82, L.83, P.86, T.90, F.95, C.96, I.105 Ligands: CLR.4, OLA.10 Ligand excluded by PLIP OLA.7: 8 residues within 4Å: Chain A: Y.68, V.71, S.72, A.75, L.79, W.154, F.158 Ligands: OLA.23 Ligand excluded by PLIP OLA.8: 5 residues within 4Å: Chain A: I.372, F.376, C.383 Ligands: CLR.2, CLR.3 Ligand excluded by PLIP OLA.9: 5 residues within 4Å: Chain A: L.215, L.219, Y.222, A.357, A.360 Ligand excluded by PLIP OLA.10: 6 residues within 4Å: Chain A: V.82, I.89, T.90, F.95 Ligands: OLA.6, OLA.13 Ligand excluded by PLIP OLA.11: 8 residues within 4Å: Chain A: C.53, V.56, W.57, V.71, A.75, I.78, L.79 Ligands: OLA.17 Ligand excluded by PLIP OLA.12: 7 residues within 4Å: Chain A: G.30, Y.34, V.37, L.388, W.389, Y.392 Ligands: OLA.20 Ligand excluded by PLIP OLA.13: 4 residues within 4Å: Chain A: I.35, L.39 Ligands: OLA.10, OLA.15 Ligand excluded by PLIP OLA.14: 3 residues within 4Å: Chain A: W.389, L.393 Ligands: OLA.21 Ligand excluded by PLIP OLA.15: 7 residues within 4Å: Chain A: S.32, I.35, T.36, L.39, A.40, V.43 Ligands: OLA.13 Ligand excluded by PLIP OLA.16: 6 residues within 4Å: Chain A: F.69, A.122, I.125, D.126, V.141, I.149 Ligand excluded by PLIP OLA.17: 3 residues within 4Å: Chain A: C.53, W.57 Ligands: OLA.11 Ligand excluded by PLIP OLA.18: 6 residues within 4Å: Chain A: L.44, L.47, G.48, L.51, V.403, F.407 Ligand excluded by PLIP OLA.19: 3 residues within 4Å: Chain A: I.152, L.156 Ligands: OLA.27 Ligand excluded by PLIP OLA.20: 6 residues within 4Å: Chain A: I.41, L.44, V.403, F.407 Ligands: OLA.12, OLA.29 Ligand excluded by PLIP OLA.21: 6 residues within 4Å: Chain A: H.385, P.387, W.389, L.393 Ligands: CLR.3, OLA.14 Ligand excluded by PLIP OLA.22: 7 residues within 4Å: Chain A: L.365, P.369, L.390, L.393, A.394, L.397 Ligands: CLR.3 Ligand excluded by PLIP OLA.23: 6 residues within 4Å: Chain A: A.147, A.151, W.154, F.158 Ligands: OLA.7, OLA.24 Ligand excluded by PLIP OLA.24: 8 residues within 4Å: Chain A: H.100, F.158, L.162, M.165, L.166 Ligands: OLA.23, OLA.26, OLA.28 Ligand excluded by PLIP OLA.25: 5 residues within 4Å: Chain A: Y.204, F.208, V.213, L.216 Ligands: OLA.5 Ligand excluded by PLIP OLA.26: 6 residues within 4Å: Chain A: A.98, H.100, G.101, F.104 Ligands: CLR.4, OLA.24 Ligand excluded by PLIP OLA.27: 9 residues within 4Å: Chain A: T.144, R.145, G.148, I.152, V.155, L.156, A.159 Ligands: OLA.19, OLA.28 Ligand excluded by PLIP OLA.28: 4 residues within 4Å: Chain A: M.165, L.166 Ligands: OLA.24, OLA.27 Ligand excluded by PLIP OLA.29: 3 residues within 4Å: Chain A: I.408, Y.411 Ligands: OLA.20 Ligand excluded by PLIP OLA.30: 3 residues within 4Å: Chain A: A.357, I.358, G.361 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.31: 4 residues within 4Å: Chain A: L.73, D.77, S.116, N.401 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.116, A:S.116, A:N.401 Water bridges: A:D.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Glover, H. et al., Photoswitch dissociation from a G protein-coupled receptor resolved by time-resolved serial crystallography. Nat Commun (2024)

Release Date

2025-01-08

Peptides

Adenosine receptor A2a,Soluble cytochrome b562: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Adenosine receptor A2a,Soluble cytochrome b562

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