SMTL ID : 8rwe.1

Crystal structure of the adenosine A2A receptor in complex with the synthetic photoswitch 'StilSwitch4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 01: 1,3-diethyl-8-[(~{E})-2-(3-methoxy-4-oxidanyl-phenyl)ethenyl]-7-methyl-purine-2,6-dione

01.1: 15 residues within 4Å: Chain A: I.91, S.92, V.109, L.110, L.192, F.193, E.194, M.202, W.367, L.370, N.374, L.388, M.391, Y.392, I.395 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.91, A:F.193, A:E.194, A:W.367, A:L.370, A:L.388 Hydrogen bonds: A:N.374 pi-Stacking: A:F.193, A:F.193

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 8 residues within 4Å: Chain A: I.372, C.375, F.376, F.379, C.380 Ligands: OLC.9, OLA.26, OLA.29 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.372, A:F.376, A:F.376, A:F.376, A:F.379, A:F.379 Water bridges: A:F.379 CLR.3: 14 residues within 4Å: Chain A: L.365, L.368, P.369, I.372, I.373, F.376, C.383, S.384, A.386, L.390 Ligands: OLA.23, OLA.26, OLA.28, OLA.30 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.365, A:L.368, A:P.369, A:I.372, A:I.373, A:F.376, A:L.390 Hydrogen bonds: A:S.384 CLR.4: 8 residues within 4Å: Chain A: F.87, A.97, A.98, G.101, I.105 Ligands: OLA.8, OLA.12, OLA.17 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.87, A:A.97, A:I.105 Hydrogen bonds: A:A.98 Water bridges: A:Q.188

23 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.5: 5 residues within 4Å: Chain A: S.32, I.35, T.36, L.39 Ligands: OLC.16 Ligand excluded by PLIP OLA.6: 8 residues within 4Å: Chain A: V.82, P.86, I.89, T.90, T.93, F.95 Ligands: OLA.8, OLC.16 Ligand excluded by PLIP OLA.7: 8 residues within 4Å: Chain A: G.30, Y.34, V.37, L.388, W.389, Y.392, T.400 Ligands: OLA.24 Ligand excluded by PLIP OLA.8: 8 residues within 4Å: Chain A: V.82, L.83, F.87, T.90, F.95, C.96 Ligands: CLR.4, OLA.6 Ligand excluded by PLIP OLA.10: 4 residues within 4Å: Chain A: Y.204, F.208 Ligands: OLC.9, OLA.11 Ligand excluded by PLIP OLA.11: 3 residues within 4Å: Chain A: Y.204, F.208 Ligands: OLA.10 Ligand excluded by PLIP OLA.12: 9 residues within 4Å: Chain A: C.53, V.56, W.57, Y.68, V.71, A.75, L.79 Ligands: CLR.4, OLC.15 Ligand excluded by PLIP OLA.13: 2 residues within 4Å: Chain A: I.152 Ligands: OLA.21 Ligand excluded by PLIP OLA.14: 4 residues within 4Å: Chain A: L.44, G.48, V.403, F.407 Ligand excluded by PLIP OLA.17: 7 residues within 4Å: Chain A: A.98, H.100, G.101, M.165 Ligands: CLR.4, OLA.19, OLA.27 Ligand excluded by PLIP OLA.18: 7 residues within 4Å: Chain A: A.147, A.151, W.154, F.158 Ligands: OLC.15, OLA.19, OLA.27 Ligand excluded by PLIP OLA.19: 5 residues within 4Å: Chain A: F.158, L.162 Ligands: OLA.17, OLA.18, OLA.27 Ligand excluded by PLIP OLA.20: 7 residues within 4Å: Chain A: F.69, A.122, I.125, I.129, V.141, I.149, C.153 Ligand excluded by PLIP OLA.21: 9 residues within 4Å: Chain A: T.144, R.145, G.148, I.152, V.155, L.156, A.159 Ligands: OLA.13, OLA.27 Ligand excluded by PLIP OLA.22: 1 residues within 4Å: Chain A: W.389 Ligand excluded by PLIP OLA.23: 4 residues within 4Å: Chain A: W.389, L.390 Ligands: CLR.3, OLA.28 Ligand excluded by PLIP OLA.24: 7 residues within 4Å: Chain A: I.41, L.44, T.400, V.403, V.404, F.407 Ligands: OLA.7 Ligand excluded by PLIP OLA.25: 3 residues within 4Å: Chain A: G.361, L.362, L.368 Ligand excluded by PLIP OLA.26: 8 residues within 4Å: Chain A: I.372, F.376, D.382, C.383, S.384 Ligands: CLR.2, CLR.3, OLA.30 Ligand excluded by PLIP OLA.27: 9 residues within 4Å: Chain A: H.100, F.158, A.159, L.162, M.165 Ligands: OLA.17, OLA.18, OLA.19, OLA.21 Ligand excluded by PLIP OLA.28: 8 residues within 4Å: Chain A: L.365, P.369, L.390, L.393, A.394, L.397 Ligands: CLR.3, OLA.23 Ligand excluded by PLIP OLA.29: 9 residues within 4Å: Chain A: L.212, L.215, L.219, Y.222, F.226, A.360, G.361, A.364 Ligands: CLR.2 Ligand excluded by PLIP OLA.30: 2 residues within 4Å: Ligands: CLR.3, OLA.26 Ligand excluded by PLIP

3 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.9: 5 residues within 4Å: Chain A: F.208, L.212, F.379 Ligands: CLR.2, OLA.10 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.208, A:L.212, A:F.379, A:F.379 OLC.15: 13 residues within 4Å: Chain A: Y.68, V.71, S.72, A.75, L.79, L.83, G.143, A.147, I.150, W.154, F.158 Ligands: OLA.12, OLA.18 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.71, A:A.75, A:L.79, A:L.83, A:I.150, A:W.154, A:W.154, A:W.154, A:F.158, A:F.158 Hydrogen bonds: A:G.143 OLC.16: 7 residues within 4Å: Chain A: P.27, S.31, I.35, L.39, T.93 Ligands: OLA.5, OLA.6 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.35, A:L.39 Hydrogen bonds: A:P.27, A:S.31 Water bridges: A:Y.392

1 x NA: SODIUM ION(Non-functional Binders)

NA.31: 4 residues within 4Å: Chain A: L.73, D.77, S.116, N.401 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.77, A:S.116, A:N.401

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Glover, H. et al., Photoswitch dissociation from a G protein-coupled receptor resolved by time-resolved serial crystallography. Nat Commun (2024)

Release Date

2025-01-08

Peptides

Adenosine receptor A2a,Soluble cytochrome b562: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Adenosine receptor A2a,Soluble cytochrome b562

Related Entries With Identical Sequence