SMTL ID : 8rwi.1

Steady state structure of the human adenosine A2A receptor bound to synthetic photoswitch 'StilSwitch2' determined by serial synchrotron crystallography

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x 01: 8-[(~{E})-2-[3,4-bis(oxidanyl)phenyl]ethenyl]-1,3-diethyl-7-methyl-purine-2,6-dione

01.1: 14 residues within 4Å: Chain A: S.92, A.106, V.109, L.110, F.193, E.194, M.202, W.367, L.370, N.374, L.388, M.391, Y.392, I.395 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.367, A:L.370, A:Y.392, A:I.395 Hydrogen bonds: A:N.374, A:Y.392 pi-Stacking: A:F.193, A:F.193

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 6 residues within 4Å: Chain A: L.212, I.372, C.375, F.376, F.379 Ligands: OLA.10 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.212, A:L.212, A:I.372, A:F.376, A:F.376, A:F.376, A:F.379, A:F.379 CLR.3: 6 residues within 4Å: Chain A: A.97, A.98, G.101, I.105 Ligands: OLA.7, OLA.9 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.97, A:I.105 Hydrogen bonds: A:A.98 CLR.4: 8 residues within 4Å: Chain A: L.368, P.369, I.372, I.373, F.376, C.383, S.384 Ligands: OLA.13 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.368, A:P.369, A:I.373, A:F.376, A:F.376 Hydrogen bonds: A:S.384

17 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.5: 5 residues within 4Å: Chain A: L.215, Y.222, A.357, A.360 Ligands: OLA.20 Ligand excluded by PLIP OLA.6: 7 residues within 4Å: Chain A: G.30, V.37, W.389, Y.392, L.393, V.396, L.397 Ligand excluded by PLIP OLA.7: 5 residues within 4Å: Chain A: A.98, H.100, G.101, F.104 Ligands: CLR.3 Ligand excluded by PLIP OLA.8: 5 residues within 4Å: Chain A: V.71, S.72, W.154 Ligands: OLA.14, OLA.18 Ligand excluded by PLIP OLA.9: 5 residues within 4Å: Chain A: V.82, P.86, F.95 Ligands: CLR.3, OLA.11 Ligand excluded by PLIP OLA.10: 2 residues within 4Å: Chain A: F.379 Ligands: CLR.2 Ligand excluded by PLIP OLA.11: 2 residues within 4Å: Ligands: OLA.9, OLA.12 Ligand excluded by PLIP OLA.12: 3 residues within 4Å: Chain A: T.90, T.93 Ligands: OLA.11 Ligand excluded by PLIP OLA.13: 5 residues within 4Å: Chain A: W.389, L.390, L.393 Ligands: CLR.4, OLA.17 Ligand excluded by PLIP OLA.14: 5 residues within 4Å: Chain A: A.147, A.151, V.155, F.158 Ligands: OLA.8 Ligand excluded by PLIP OLA.15: 4 residues within 4Å: Chain A: S.32, T.36, L.39, A.40 Ligand excluded by PLIP OLA.16: 6 residues within 4Å: Chain A: L.44, L.47, G.48, V.403, F.407, I.424 Ligand excluded by PLIP OLA.17: 2 residues within 4Å: Chain A: W.389 Ligands: OLA.13 Ligand excluded by PLIP OLA.18: 6 residues within 4Å: Chain A: V.56, W.57, Y.68, V.71, A.75 Ligands: OLA.8 Ligand excluded by PLIP OLA.19: 2 residues within 4Å: Chain A: L.44, F.407 Ligand excluded by PLIP OLA.20: 2 residues within 4Å: Chain A: L.362 Ligands: OLA.5 Ligand excluded by PLIP OLA.21: 6 residues within 4Å: Chain A: F.69, A.122, I.125, D.126, V.141, I.149 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.22: 3 residues within 4Å: Chain A: D.77, S.116, N.401 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.77, A:S.116 Water bridges: A:D.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Glover, H. et al., Photoswitch dissociation from a G protein-coupled receptor resolved by time-resolved serial crystallography. Nat Commun (2024)

Release Date

2025-01-08

Peptides

Adenosine receptor A2a,Soluble cytochrome b562: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Adenosine receptor A2a,Soluble cytochrome b562

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