SMTL ID : 8rwx.1

Steady state structure of the human adenosine A2A receptor bound to synthetic photoswitch 'StilSwitch3' determined by serial synchrotron crystallography

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.05 Å

Oligo State

monomer

Ligands

1 x 01: 1,3-diethyl-8-[(~{E})-2-(4-methoxy-3-oxidanyl-phenyl)ethenyl]-7-methyl-purine-2,6-dione

01.1: 11 residues within 4Å: Chain A: Y.34, S.92, V.109, L.110, F.193, M.202, L.370, N.374, M.391, Y.392, I.395 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.110, A:F.193, A:Y.392, A:I.395 Hydrogen bonds: A:S.92, A:N.374 pi-Stacking: A:F.193, A:F.193

16 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.2: 4 residues within 4Å: Chain A: V.50, C.53, W.57 Ligands: OLA.13 Ligand excluded by PLIP OLA.3: 7 residues within 4Å: Chain A: L.219, Y.222, A.357, A.360, G.361, A.364 Ligands: OLA.15 Ligand excluded by PLIP OLA.4: 6 residues within 4Å: Chain A: G.30, V.33, V.37, Y.392, L.393, L.397 Ligand excluded by PLIP OLA.5: 2 residues within 4Å: Chain A: A.98, G.101 Ligand excluded by PLIP OLA.6: 5 residues within 4Å: Chain A: V.82, L.83, P.86, F.95 Ligands: OLA.8 Ligand excluded by PLIP OLA.7: 1 residues within 4Å: Ligands: OLA.8 Ligand excluded by PLIP OLA.8: 5 residues within 4Å: Chain A: L.39, P.86, T.90 Ligands: OLA.6, OLA.7 Ligand excluded by PLIP OLA.9: 5 residues within 4Å: Chain A: A.147, A.151, W.154, F.158 Ligands: OLA.17 Ligand excluded by PLIP OLA.10: 4 residues within 4Å: Chain A: S.32, T.36, L.39, A.40 Ligand excluded by PLIP OLA.11: 4 residues within 4Å: Chain A: L.44, L.47, G.48, F.407 Ligand excluded by PLIP OLA.12: 1 residues within 4Å: Chain A: W.389 Ligand excluded by PLIP OLA.13: 7 residues within 4Å: Chain A: V.56, W.57, Y.68, V.71, A.75 Ligands: OLA.2, OLA.17 Ligand excluded by PLIP OLA.14: 3 residues within 4Å: Chain A: L.44, T.400, F.407 Ligand excluded by PLIP OLA.15: 3 residues within 4Å: Chain A: G.361, L.362 Ligands: OLA.3 Ligand excluded by PLIP OLA.16: 7 residues within 4Å: Chain A: F.69, A.122, I.125, D.126, V.141, I.149, C.153 Ligand excluded by PLIP OLA.17: 5 residues within 4Å: Chain A: V.71, S.72, W.154 Ligands: OLA.9, OLA.13 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.18: 4 residues within 4Å: Chain A: D.77, S.116, N.401, S.402 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.116, A:N.401

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Glover, H. et al., Photoswitch dissociation from a G protein-coupled receptor resolved by time-resolved serial crystallography. Nat Commun (2024)

Release Date

2025-01-08

Peptides

Adenosine receptor A2a,Soluble cytochrome b562: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Adenosine receptor A2a,Soluble cytochrome b562

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