SMTL ID : 8s75.2 (1 other biounit)

Soluble epoxide hydrolase in complex with PROTAC FL412

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: S.34, C.35, N.36, D.39, M.40, P.82 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.36

1 x 01: ~{N}-[2-[2-[2-[2-[2-[2-[2-[2,6-bis(oxidanylidene)piperidin-3-yl]-1,3-bis(oxidanylidene)isoindol-4-yl]oxyethanoylamino]ethoxy]ethoxy]ethoxy]ethoxy]ethyl]-4-[4-[[4-(trifluoromethyloxy)phenyl]carbamoylamino]cyclohexyl]oxy-benzamide

01.2: 16 residues within 4Å: Chain A: F.70, D.138, W.139, M.142, I.166, F.184, Y.186, Q.187, F.190, L.211, L.220, M.222, L.231, Y.269, M.306, H.327 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.70, A:W.139, A:F.184, A:Y.186 Hydrogen bonds: A:D.138, A:D.138, A:Y.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, A. et al., Soluble epoxide hydrolase in complex with PROTAC FL412. To Be Published

Release Date

2025-03-12

Peptides

Bifunctional epoxide hydrolase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bifunctional epoxide hydrolase 2

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