SMTL ID : 8s77.1 (1 other biounit)

Soluble epoxide hydrolase in complex with PROTAC JSF234

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

monomer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: S.34, C.35, N.36, M.40, P.82 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.36, A:N.36 EDO.2: 3 residues within 4Å: Chain A: G.59, A.85, Q.86 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.85 Water bridges: A:G.88 EDO.3: 3 residues within 4Å: Chain A: I.108, P.193, R.263 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.263, A:R.263 EDO.4: 6 residues within 4Å: Chain A: S.41, H.42, G.43, F.55, E.57, L.127 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.41, A:S.41, A:E.57 EDO.6: 5 residues within 4Å: Chain A: G.61, P.62, A.63, R.90 Ligands: EDO.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.63, A:R.90 EDO.7: 3 residues within 4Å: Chain A: G.61, P.62 Ligands: EDO.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.61

1 x 01: ~{N}-[[4-(cyclopropylsulfonylamino)-2-(trifluoromethyl)phenyl]methyl]-1-ethylsulfonyl-indole-5-carboxamide

01.5: 22 residues within 4Å: Chain A: F.70, P.71, D.138, W.139, M.142, T.163, I.166, F.184, Y.186, Q.187, F.190, L.211, M.222, Y.269, K.298, D.299, F.300, V.301, L.302, M.306, H.327, W.328 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.163, A:I.166, A:F.300, A:V.301 Hydrogen bonds: A:D.138, A:Y.269, A:F.300, A:V.301 pi-Stacking: A:W.139, A:W.139 Halogen bonds: A:F.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, A. et al., Soluble epoxide hydrolase in complex with PROTAC JSF234. To Be Published

Release Date

2025-03-12

Peptides

Bifunctional epoxide hydrolase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bifunctional epoxide hydrolase 2

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