SMTL ID : 8s77.2 (1 other biounit)

Soluble epoxide hydrolase in complex with PROTAC JSF234

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

monomer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 7 residues within 4Å: Chain A: G.61, P.62, A.63, R.90, L.129, S.130, Q.131 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.63, A:R.90, A:S.130, A:S.130, A:Q.131

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: T.33, S.34, C.35, N.36, D.39, M.40, P.82 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.36

1 x 01: ~{N}-[[4-(cyclopropylsulfonylamino)-2-(trifluoromethyl)phenyl]methyl]-1-ethylsulfonyl-indole-5-carboxamide

01.3: 20 residues within 4Å: Chain A: F.70, P.71, D.138, W.139, M.142, T.163, F.184, Y.186, Q.187, F.190, L.211, L.220, M.222, Y.269, K.298, F.300, V.301, M.306, H.327, W.328 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.269, A:V.301, A:H.327 Hydrogen bonds: A:D.138, A:Y.186, A:Q.187 pi-Stacking: A:W.139, A:W.139 Halogen bonds: A:F.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, A. et al., Soluble epoxide hydrolase in complex with PROTAC JSF234. To Be Published

Release Date

2025-03-12

Peptides

Bifunctional epoxide hydrolase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bifunctional epoxide hydrolase 2

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