SMTL ID : 8t1o.1

AP2 bound to MSP2N2 nanodisc with Tgn38 cargo peptide; composite map

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x PIO: [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate(Non-covalent)

PIO.1: 8 residues within 4Å: Chain A: R.11, G.12, V.15, N.39, Y.53, K.57, Y.58, K.61 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.11, A:G.12, A:N.39, A:Y.58 Salt bridges: A:R.11, A:K.57, A:K.57, A:K.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

S Cannon, K. et al., Lipid nanodiscs as a template for high-resolution cryo-EM structures of peripheral membrane proteins. J.Struct.Biol. (2023)

Release Date

2023-07-12

Peptides

AP-2 complex subunit alpha-2: A
AP-2 complex subunit beta: B
AP-2 complex subunit mu: C
AP-2 complex subunit sigma: D
Trans-Golgi network integral membrane protein TGN38: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
M

D
S

E
P

AP-2 complex subunit alpha-2

AP-2 complex subunit beta

AP-2 complex subunit mu

AP-2 complex subunit sigma

Trans-Golgi network integral membrane protein TGN38

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