SMTL ID : 8vjf.1

Human R14A Pin1 covalently bound to inhibitor 158D9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ACE- MTY- YCP- TRP- NH2: inhibitor 158D9(Non-covalent)

ACE-MTY-YCP-TRP-NH2.1: 10 residues within 4Å: Chain A: H.62, C.116, S.117, S.118, L.125, Q.132, M.133, Q.134, F.137 Ligands: SO4.5 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.125, A:Q.134, A:F.137, A:F.137 Hydrogen bonds: A:S.117, A:Q.134 Water bridges: A:S.157

1 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)

P33.2: 11 residues within 4Å: Chain A: Y.26, N.33, A.34, S.35, Q.36, W.37, I.96, K.100, M.149, S.150, G.151 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.26, A:S.35, A:K.100 Water bridges: A:S.35, A:M.149

1 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.3: 4 residues within 4Å: Chain A: R.77, Q.78, R.83, L.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.83, A:R.83

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: K.66, S.70, R.71, R.72, S.157 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.72 Salt bridges: A:K.66 SO4.5: 4 residues within 4Å: Chain A: C.116, S.117 Ligands: ACE-MTY-YCP-TRP-NH2.1, ACE-MTY-YCP-TRP-NH2.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.117 SO4.6: 3 residues within 4Å: Chain A: R.145, T.146, R.164 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.146, A:T.146, A:T.146 Salt bridges: A:R.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alboreggia, G. et al., Targeted Degradation of Pin1 by Protein Destabilizing Compounds. To Be Published

Release Date

2024-11-06

Peptides

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1

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