SMTL ID : 8vjg.1

Human R14A Pin1 covalently bound to inhibitor 164A10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x 01: Nalpha-{(2S)-1-[(3S)-2-acetyl-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indole-3-carbonyl]piperidine-2-carbonyl}-5-fluoro-L-tryptophanamide

01.1: 14 residues within 4Å: Chain A: H.62, L.64, C.116, S.117, S.118, D.124, L.125, F.128, Q.132, M.133, Q.134, F.137, H.160 Ligands: SO4.5 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.64, A:L.125, A:F.137, A:F.137 Hydrogen bonds: A:Q.134 Water bridges: A:S.157 Halogen bonds: A:Q.132

1 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)

P33.2: 12 residues within 4Å: Chain A: Y.26, N.33, A.34, S.35, Q.36, W.37, I.96, K.100, E.148, M.149, S.150, G.151 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.35, A:K.100, A:M.149 Water bridges: A:S.35, A:S.35

1 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.3: 4 residues within 4Å: Chain A: Q.78, T.82, R.83, L.91 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.83

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: K.66, R.71, R.72, S.157 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.71, A:R.71, A:R.72 Water bridges: A:K.66, A:K.66, A:S.157, A:S.157 Salt bridges: A:K.66, A:R.72 SO4.5: 4 residues within 4Å: Chain A: R.72, C.116, S.117 Ligands: 01.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.117, A:S.117 Water bridges: A:K.66 Salt bridges: A:K.66 SO4.6: 3 residues within 4Å: Chain A: R.145, T.146, R.164 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.146, A:T.146, A:T.146 Water bridges: A:R.164, A:R.164, A:R.164 Salt bridges: A:R.164 SO4.7: 2 residues within 4Å: Chain A: M.18, R.20 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.18, A:M.18 Water bridges: A:Y.26 Salt bridges: A:R.20 SO4.8: 2 residues within 4Å: Chain A: Q.78, E.79 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.79 Water bridges: A:K.80, A:K.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alboreggia, G. et al., Targeted Degradation of Pin1 by Protein Destabilizing Compounds. To Be Published

Release Date

2024-11-06

Peptides

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1

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