SMTL ID : 8x20.2 (1 other biounit)

HIV-1 reverse transcriptase mutant Q151M/Y115F/F116Y/L74V:DNA:E-CFCP-TP ternary complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x XTE: E-CFCP-triphosphate(Non-covalent)

XTE.1: 16 residues within 4Å: Chain A: K.67, R.74, V.113, G.114, D.115, A.116, F.117, M.153, G.154, F.162, M.186, D.187 Chain C: C.5, G.6, C.38 Ligands: MG.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.117, A:F.117 Hydrogen bonds: A:D.115, A:D.115, A:D.115, A:A.116, A:F.117, A:G.154 Salt bridges: A:K.67, A:K.67, A:K.72, A:R.74, A:R.74 Halogen bonds: A:D.187

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: V.113, D.187 Ligands: XTE.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:V.113, A:D.187

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: K.368, T.371, Y.407, Q.409, A.410, T.411 Chain B: I.409, Q.410, T.413 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.409, A:T.411, B:Q.410 Water bridges: A:T.371, A:T.371 GOL.4: 8 residues within 4Å: Chain A: L.94, G.95, V.383 Chain B: Q.39, W.40, P.41, P.149, N.153 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.39, B:N.153, B:N.153 Water bridges: B:S.150, B:S.150 GOL.5: 8 residues within 4Å: Chain B: W.282, E.344, Q.356, Y.358, P.361, F.362, N.364, W.442 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.362

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yasutake, Y. et al., Deviated binding of anti-HBV nucleoside analog E-CFCP-TP to the reverse transcriptase active site attenuates the effect of drug-resistant mutations. Sci Rep (2024)

Release Date

2024-07-17

Peptides

Pol protein (Fragment): A
HIV-1 RT p51 subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Pol protein (Fragment)

HIV-1 RT p51 subunit

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