SMTL ID : 8xy9.1 (1 other biounit)

Crystal structure of SARS-CoV-2 BF.7 RBD and human ACE2 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.64 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-functional Binders)

NAG-NAG-BMA.1: 3 residues within 4Å: Chain A: N.35, E.39, Q.322 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 1 residues within 4Å: Chain A: N.72 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)(Post Translational Modification)

NAG-NAG.3: 1 residues within 4Å: Chain A: N.304 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain A: S.402, N.528 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)(Non-covalent)

NAG.5: 3 residues within 4Å: Chain A: Q.63, N.85, V.89 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.85 NAG.6: 2 residues within 4Å: Chain A: N.414, E.415 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.414

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lan, J. et al., Crystal structure of SARS-CoV-2 BF.7 RBD and human ACE2. To Be Published

Release Date

2025-01-22

Peptides

Processed angiotensin-converting enzyme 2: A
Spike protein S1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Processed angiotensin-converting enzyme 2

Spike protein S1

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