SMTL ID : 8y88.1

Structure of HCoV-HKU1C spike in the functionally anchored-2up conformation with 2TMPRSS2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-2-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: H.129, I.132, K.173, N.175 Chain C: P.312 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain B: H.129, I.132, N.175 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain C: H.129, I.132, E.134, N.175 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 5 residues within 4Å: Chain A: S.551 Chain B: D.4, F.5, N.119, T.141 No protein-ligand interaction detected (PLIP)

18 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 4 residues within 4Å: Chain A: G.604, Y.686, N.689, N.690 Ligand excluded by PLIP NAG.6: 4 residues within 4Å: Chain A: N.318, W.319, N.322, R.334 Ligand excluded by PLIP NAG.7: 3 residues within 4Å: Chain A: F.648, L.649, N.651 Ligand excluded by PLIP NAG.8: 4 residues within 4Å: Chain A: F.700, D.701, N.712, T.714 Ligand excluded by PLIP NAG.9: 1 residues within 4Å: Chain A: N.780 Ligand excluded by PLIP NAG.10: 6 residues within 4Å: Chain A: V.1197, N.1198 Chain B: D.867, N.868, Q.988, K.989 Ligand excluded by PLIP NAG.11: 2 residues within 4Å: Chain A: N.179, S.181 Ligand excluded by PLIP NAG.12: 1 residues within 4Å: Chain A: N.45 Ligand excluded by PLIP NAG.13: 2 residues within 4Å: Chain B: N.45, E.259 Ligand excluded by PLIP NAG.14: 3 residues within 4Å: Chain B: G.604, Y.686, N.690 Ligand excluded by PLIP NAG.15: 2 residues within 4Å: Chain B: L.649, N.651 Ligand excluded by PLIP NAG.16: 1 residues within 4Å: Chain B: N.780 Ligand excluded by PLIP NAG.17: 3 residues within 4Å: Chain B: N.179, S.181, A.182 Ligand excluded by PLIP NAG.18: 2 residues within 4Å: Chain C: N.45, E.259 Ligand excluded by PLIP NAG.19: 2 residues within 4Å: Chain C: N.179, S.181 Ligand excluded by PLIP NAG.20: 4 residues within 4Å: Chain C: D.701, N.712, T.714, S.715 Ligand excluded by PLIP NAG.21: 2 residues within 4Å: Chain A: P.967 Chain C: N.1198 Ligand excluded by PLIP NAG.22: 2 residues within 4Å: Chain C: L.649, N.651 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., TMPRSS2 and glycan receptors synergistically facilitate coronavirus entry. Cell (2024)

Release Date

2024-07-17

Peptides

Spike glycoprotein: ABC
Transmembrane protease serine 2: DE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
T

E
I

Spike glycoprotein

Transmembrane protease serine 2

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