SMTL ID : 8y8i.1

Structure of HCoV-HKU1C spike in the glycan-activated-3up conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: F.700, D.701, N.712, S.715 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.700 Hydrogen bonds: A:D.701, A:N.712 NAG.2: 3 residues within 4Å: Chain A: I.132, E.134, N.175 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.134, A:N.175 NAG.3: 2 residues within 4Å: Chain B: F.648, N.651 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.651 NAG.4: 2 residues within 4Å: Chain C: L.649, N.651 No protein-ligand interaction detected (PLIP) NAG.5: 1 residues within 4Å: Chain C: N.45 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.45 NAG.6: 1 residues within 4Å: Chain C: N.175 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., TMPRSS2 and glycan receptors synergistically facilitate coronavirus entry. Cell (2024)

Release Date

2024-07-17

Peptides

Spike glycoprotein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

Spike glycoprotein

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