SMTL ID : 8y8e.1

Structure of HCoV-HKU1C spike in the inactive-2up conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

16 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: E.134, K.173, N.175 Ligand excluded by PLIP NAG.2: 2 residues within 4Å: Chain A: L.649, N.651 Ligand excluded by PLIP NAG.3: 4 residues within 4Å: Chain A: F.700, D.701, N.712, T.714 Ligand excluded by PLIP NAG.4: 2 residues within 4Å: Chain A: N.45, E.259 Ligand excluded by PLIP NAG.5: 2 residues within 4Å: Chain A: E.907, N.911 Ligand excluded by PLIP NAG.6: 4 residues within 4Å: Chain B: F.700, D.701, N.712, T.714 Ligand excluded by PLIP NAG.7: 1 residues within 4Å: Chain B: N.780 Ligand excluded by PLIP NAG.8: 4 residues within 4Å: Chain A: Q.988 Chain B: S.1196, V.1197, N.1198 Ligand excluded by PLIP NAG.9: 4 residues within 4Å: Chain B: D.4, V.118, N.119, T.141 Ligand excluded by PLIP NAG.10: 1 residues within 4Å: Chain B: N.175 Ligand excluded by PLIP NAG.11: 4 residues within 4Å: Chain B: N.179, S.181, A.182, D.183 Ligand excluded by PLIP NAG.12: 3 residues within 4Å: Chain B: L.649, T.650, N.651 Ligand excluded by PLIP NAG.13: 3 residues within 4Å: Chain C: H.129, E.134, N.175 Ligand excluded by PLIP NAG.14: 2 residues within 4Å: Chain C: N.179, A.182 Ligand excluded by PLIP NAG.15: 3 residues within 4Å: Chain C: D.701, N.712, T.714 Ligand excluded by PLIP NAG.16: 1 residues within 4Å: Chain C: N.45 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., TMPRSS2 and glycan receptors synergistically facilitate coronavirus entry. Cell (2024)

Release Date

2024-07-17

Peptides

Spike glycoprotein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
B

C
A

Spike glycoprotein

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